BAC Information

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BAC

Clone NameB6Ng01-346M15
Chromosome4 (Build37)
Map Location 117,932,499 - 118,079,657
singlet/doubletdoublet
Overlap genePtprf, Hyi, BC059842
Upstream geneTmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a
Downstream geneMed8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M15.bB6Ng01-346M15.g
ACCGA128588GA128589
length6461,041
definitionB6Ng01-346M15.b B6Ng01-346M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,079,012 - 118,079,657)(117,932,499 - 117,933,535)
sequence
gaattcagttggtctctgattgtacccaggaatcaaataatgcattttaa
taaacggctcaggtgattctgatgcagctggcgctcagatcccactttgc
aaaacattctacctgcttaaattatattaagccagccttctggttctggt
gaagtacatctgaaatgtaaaaaagcttaggaggttttggaaatggtccc
atcaagcaatcagataaacgggaattttccgagaaggctagaccaacatt
cctgggttcaagatggattccataagaactgacaggtgaaccagacttca
actgggccttggaaaaagcggtcatccaaaacagctttgaaagcaaaaaa
aaggtagagaagtggaagccgtgcattgtgcagctcaatgctccagtgca
ctttcagtacttaagtagccgatgtctgtcctccatctgggacgtccagc
agcaagctctgatggaccttcctcccatccttctaagaccttagacagga
tcaggttactttgtgtcttgctgtcctaaaaccacatccttagctgttag
catgcttattcagtttgtaatgatacaataactagggtgattattcagtt
tttgtgaatggtagtaggcaagttggtctgtttggggggggggatg
gaattcttgacacggggaaggtctttgggacctacgccaaattaaggaca
attaattttcctccctcaattatcacaccctcaaatggctccgtccttgg
ctcagatcattccttaggcgccactgccaaagcctaaaaccagggagtgt
gaagagcgactactgaacagcaggacccaaaagcaagtccctggggccag
ctaggttcccaagcagtgagcacaggcaaggttgcttcttagaccactcc
aggaggggaagtcagcccctgagggctgacctgctgctgcagcagcctcc
tcctctcccacctgggagccttcagcacactcttatcagtcaaggacaac
agacattccccagatgcctgcggagtgactggcccccttgccaccttaag
cctcccccccccaccaccaccaccagagctgtgtctatagaagtccaaac
cactcaggttaatgaccaaggcaaatttctcaagaggatgcatgccacac
tgtcacttccaacccatcaacaactgagaaaactgaggcctctggacaca
gggataaaaggttccaagcatgaagcagtccctctgtttcaggtttacaa
aatgacaatctttaccaaaaccctatgaggcatatgagcaaatggggact
tggcagaaatctggaaacctgcccaaggtcactcagttaaattggaggtg
tggcttggaggaaagcaggtggtaggaccctgctgctttagactagcatt
cacgaaaaggtgggcagggcaggggaagggaggggcgtccctgggaagag
ccacgcccttccccctctccccgcccttaaccggcttccggctacggact
ctactgcagaccccccatgcacacacgcctctacgtttttttcaggtgct
gtaaaggaagcccaatgctccccacatgtggacattccctggcacgcgcc
ttgtgtgtgtgtgggttgcacgggttacgctattagcccctccaaacacg
ggctgctggtgcggagggccccctccccactctaggcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118079012_118079657
seq2: B6Ng01-346M15.b_44_689 (reverse)

seq1  CATCCCCCCCCCCAAACAGACCAACTTGCCTACTACCATTCACAAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCCCCCCAAACAGACCAACTTGCCTACTACCATTCACAAAAACT  50

seq1  GAATAATCACCCTAGTTATTGTATCATTACAAACTGAATAAGCATGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCACCCTAGTTATTGTATCATTACAAACTGAATAAGCATGCTAA  100

seq1  CAGCTAAGGATGTGGTTTTAGGACAGCAAGACACAAAGTAACCTGATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGATGTGGTTTTAGGACAGCAAGACACAAAGTAACCTGATCCT  150

seq1  GTCTAAGGTCTTAGAAGGATGGGAGGAAGGTCCATCAGAGCTTGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGTCTTAGAAGGATGGGAGGAAGGTCCATCAGAGCTTGCTGCTG  200

seq1  GACGTCCCAGATGGAGGACAGACATCGGCTACTTAAGTACTGAAAGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCCCAGATGGAGGACAGACATCGGCTACTTAAGTACTGAAAGTGCA  250

seq1  CTGGAGCATTGAGCTGCACAATGCACGGCTTCCACTTCTCTACCTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCATTGAGCTGCACAATGCACGGCTTCCACTTCTCTACCTTTTTT  300

seq1  TTGCTTTCAAAGCTGTTTTGGATGACCGCTTTTTCCAAGGCCCAGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCAAAGCTGTTTTGGATGACCGCTTTTTCCAAGGCCCAGTTGAA  350

seq1  GTCTGGTTCACCTGTCAGTTCTTATGGAATCCATCTTGAACCCAGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTCACCTGTCAGTTCTTATGGAATCCATCTTGAACCCAGGAATG  400

seq1  TTGGTCTAGCCTTCTCGGAAAATTCCCGTTTATCTGATTGCTTGATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTAGCCTTCTCGGAAAATTCCCGTTTATCTGATTGCTTGATGGGA  450

seq1  CCATTTCCAAAACCTCCTAAGCTTTTTTACATTTCAGATGTACTTCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCAAAACCTCCTAAGCTTTTTTACATTTCAGATGTACTTCACCA  500

seq1  GAACCAGAAGGCTGGCTTAATATAATTTAAGCAGGTAGAATGTTTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAAGGCTGGCTTAATATAATTTAAGCAGGTAGAATGTTTTGCAA  550

seq1  AGTGGGATCTGAGCGCCAGCTGCATCAGAATCACCTGAGCCGTTTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATCTGAGCGCCAGCTGCATCAGAATCACCTGAGCCGTTTATTAA  600

seq1  AATGCATTATTTGATTCCTGGGTACAATCAGAGACCAACTGAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTATTTGATTCCTGGGTACAATCAGAGACCAACTGAATTC  646

seq1: chr4_117932499_117933535
seq2: B6Ng01-346M15.g_68_1108

seq1  GAATTCTTGACACGGGGAAGGTCTTTGGGACCTACGCCAAATTAAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACACGGGGAAGGTCTTTGGGACCTACGCCAAATTAAGGACA  50

seq1  ATTAATTTTCCTCCCTCAATTATCACACCCTCAAATGGCTCCGTCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTTCCTCCCTCAATTATCACACCCTCAAATGGCTCCGTCCTTGG  100

seq1  CTCAGATCATTCCTTAGGCGCCACTGCCAAAGCCTAAAACCAGGGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCATTCCTTAGGCGCCACTGCCAAAGCCTAAAACCAGGGAGTGT  150

seq1  GAAGAGCGACTACTGAACAGCAGGACCCAAAAGCAAGTCCCTGGGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCGACTACTGAACAGCAGGACCCAAAAGCAAGTCCCTGGGGCCAG  200

seq1  CTAGGTTCCCAAGCAGTGAGCACAGGCAAGGTTGCTTCTTAGACCACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCCCAAGCAGTGAGCACAGGCAAGGTTGCTTCTTAGACCACTCC  250

seq1  AGGAGGGGAAGTCAGCCCCTGAGGGCTGACCTGCTGCTGCAGCAGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGAAGTCAGCCCCTGAGGGCTGACCTGCTGCTGCAGCAGCCTCC  300

seq1  TCCTCTCCCACCTGGGAGCCTTCAGCACACTCTTATCAGTCAAGGACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCCACCTGGGAGCCTTCAGCACACTCTTATCAGTCAAGGACAAC  350

seq1  AGACATTCCCCAGATGCCTGCGGAGTGACTGGCCCCCTTGCCACCTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCCCCAGATGCCTGCGGAGTGACTGGCCCCCTTGCCACCTTAAG  400

seq1  CCTCCCCCCCCCACCACCACCACCAGAGCTGTGTCTATAGAAGTCCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCCCCACCACCACCACCAGAGCTGTGTCTATAGAAGTCCAAAC  450

seq1  CACTCAGGTTAATGACCAAGGCAAATTTCTCAAGAGGATGCATGCCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGTTAATGACCAAGGCAAATTTCTCAAGAGGATGCATGCCACAC  500

seq1  TGTCACTTCCAACCCATCAACAACTGAGAAAACTGAGGCCTCTGGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCCAACCCATCAACAACTGAGAAAACTGAGGCCTCTGGACACA  550

seq1  GGGATAAAAGGTTCCAAGCATGAAGCAGTCCCTCTGTTTCAGGTTTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAAGGTTCCAAGCATGAAGCAGTCCCTCTGTTTCAGGTTTACAA  600

seq1  AATGACAATCTTTACCAAAACCCTATGAGGCATATGAGCAAATGGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAATCTTTACCAAAACCCTATGAGGCATATGAGCAAATGGGGACT  650

seq1  TGGCAGAAATCTGGAAACCTGCCCAAGGTCACTCAGTTAAATTGGAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAATCTGGAAACCTGCCCAAGGTCACTCAGTTAAATTGGAGGTG  700

seq1  TGGCTTGGAGGAAAGCAGGTGGTAGGACCCTGCTGCTTTAGACTAGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGAGGAAAGCAGGTGGTAGGACCCTGCTGCTTTAGACTAGCATT  750

seq1  CACGAAAAGGTGGGCAGGGCAGGGGAAGGGAGGGGCGTCCCTGGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAAAGGTGGGCAGGGCAGGGGAAGGGAGGGGCGTCCCTGGGAAGAG  800

seq1  CCACGCCCTTCCCCCTCTCCCCGCCCTTAACCGGCTTCCGGCTACGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCTTCCCCCTCTCCCCGCCCTTAACCGGCTTCCGGCTACGGACT  850

seq1  CTACTGCAGACCCCCCATGCACACACGCCTCTACG-TTTTTTCAGGTGCT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACTGCAGACCCCCCATGCACACACGCCTCTACGTTTTTTTCAGGTGCT  900

seq1  GTAAAGGAAGCCCAATGCTCCCCACATGTGGACA-TCCCTGGCACGCGCC  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAAAGGAAGCCCAATGCTCCCCACATGTGGACATTCCCTGGCACGCGCC  950

seq1  -TGTGTGTGTGTGGG-TGCACGGGTTACGCTA-TAGCCCCTCCAAACACG  995
       |||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TTGTGTGTGTGTGGGTTGCACGGGTTACGCTATTAGCCCCTCCAAACACG  1000

seq1  GGCTGCTGGTGCGGGAGGGCCCCTCCCCACTCCAGGCCACCC  1037
      ||||||||||||||  || ||||||||||||| ||| |||||
seq2  GGCTGCTGGTGCGGAGGGCCCCCTCCCCACTCTAGG-CACCC  1041