BAC Information

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BAC

Clone NameB6Ng01-346O04
Chromosome4 (Build37)
Map Location 24,706,161 - 24,809,652
singlet/doubletdoublet
Overlap geneKlhl32
Upstream geneLOC623873, LOC664973, F730047E07Rik
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346O04.bB6Ng01-346O04.g
ACCGA128658GA128659
length1,2171,136
definitionB6Ng01-346O04.b B6Ng01-346O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,706,161 - 24,707,372)(24,808,506 - 24,809,652)
sequence
gaattctctgtgttaagcttgggcattgttcttttcctttagaactcgga
cttgtactggaccattaacgacttcctcttatttctccatgcttctcatt
tggacaactgtaccatccattaattcccctagatatccagcttgccccta
cagattgggcaatgccctagcctctatagtgatataaatccgtaaatcta
tgcatctctcttttgacctacctacatattggttttgtttctctggatct
tctaatactatttattatcctggagcatcatcattactatttggggcact
aaagagccagccagctctggtacacttctcttgatttgaaaatatcctct
ctcgattttcttagaattcctttgacgtgaaacaaagacctaagtttatt
aaagctgtcagttcttcaagaggatattaattttttataaatattttcat
aaatatatattataaatataaaagtattcatttgtaacaagctattccct
tgatgtttacaaaactagagccttcactagaaattcactttccctaaata
caacaaaccaattattaggaagctattactaaggcccaaagtttatggta
gtctccatttaccctttgttatctgtttactcctatcatgttcaagctcc
taagaactactccttttttccctctccaacagtttttcccggaatattgt
cttcagcctagctcctttcactttcacagtgtcatctatgactttccaca
gccttataaatcattcttccccattcactgactattattccatggtgtgg
gtagaccacagcttccctgtttgtctagtgaaggataccatggtagcttc
tgtgtaagagtaattatgtacaatggtagagaagatcttcccatgaagag
agtgtaaagaaaagcaatgcttgcagtgcccagggataaagctggcagga
attattgcaagggtaaagcttcttggacattctcacttgatgtctacaaa
acagcaaaattatttttcaatagaaaccttcctgtcacaacatatgttat
cctacccatgaaacttataacgtgtttcttaaatggaattgcccatgtca
attatacatttcaccaggactttacccaggcttccttttgtgttctagaa
ccattggatgaaaataatgaccggttaccgaccagtgaaggttatgttgt
agaaatgcaatggtagg
gaattcttcacatccttacagacttgcttgttatgaaagaaggaacatct
tttgataacagttttggttttaatagcagtgaggtaattttgctctgctc
ataacagttaaatcaacacagcaactctctgtatcttgttctttgcaaag
gaaatttttggcaaggagaaatactatgagaagcaaacattcaagaacta
ctttttatttaaaacaccataaaagcatggaatttacattccagaaattc
tagaagagctttgaaaagccaaactgtgttgttcacactgtgtatctgtc
ttcgaaagtgtaatcctttctctctactcttgttgtctctgtggttgttt
gtgtagcatccaaggcatatgcatgaggctggccacagacagacctgatg
ttggtcatatgacttcctgacttatggttctttgaagtaagttcttacca
tctttgatacacagtttcctctactacataaatactattcactttttaag
ggttctatgagactcaatccatttgaagtggaaggactggcatatagtaa
atatgcaatatttattcaatgtatgtatggtgctttgaatatgtttggcc
cagggagtggcactattgggagatttggtcttgttggagaaggcgtgtca
ctgtggaggcagggctttgaggtaatatatgtgttcaagctctgcccaat
atgagacacagtcgtcttctcctggttgactgcagtacaagaagtaaaac
tctcagctcctccagtgccatgccttcttggaccctgccatacttcctac
catgatgataatgagcagaacctcagaacctgtaagccagccccaattaa
atgttgtcctttataagagttgtcttggtcatggtgtttcttcacagcaa
tgaaaccctaagacaataagcaacattttactactaatgcttaggtttgg
gttgattcttaaactgtaaaaatatatttagattgttattatataataat
aatatatataatttttacaatctcagttgcccttcttctgacatggtcct
tgaccttggaagagggcctgttgaatacagatgttccaatctgaacgagc
actctgtagaaccttttctgcattttacttgagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_24706161_24707372
seq2: B6Ng01-346O04.b_47_1263

seq1  GAATTCTCTGTGTTAAGCTTGGGCATTGTTCTTTTCCTTTAGAACTCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGTTAAGCTTGGGCATTGTTCTTTTCCTTTAGAACTCGGA  50

seq1  CTTGTACTGGACCATTAACGACTTCCTCTTATTTCTCCATGCTTCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTGGACCATTAACGACTTCCTCTTATTTCTCCATGCTTCTCATT  100

seq1  TGGACAACTGTACCATCCATTAATTCCCCTAGATATCCAGCTTGCCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACTGTACCATCCATTAATTCCCCTAGATATCCAGCTTGCCCCTA  150

seq1  CAGATTGGGCAATGCCCTAGCCTCTATAGTGATATAAATCCGTAAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGGCAATGCCCTAGCCTCTATAGTGATATAAATCCGTAAATCTA  200

seq1  TGCATCTCTCTTTTGACCTACCTACATATTGGTTTTGTTTCTCTGGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCTCTTTTGACCTACCTACATATTGGTTTTGTTTCTCTGGATCT  250

seq1  TCTAATACTATTTATTATCCTGGAGCATCATCATTACTATTTGGGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTATTTATTATCCTGGAGCATCATCATTACTATTTGGGGCACT  300

seq1  AAAGAGCCAGCCAGCTCTGGTACACTTCTCTTGATTTGAAAATATCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCAGCCAGCTCTGGTACACTTCTCTTGATTTGAAAATATCCTCT  350

seq1  CTCGATTTTCTTAGAATTCCTTTGACGTGAAACAAAGACCTAAGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATTTTCTTAGAATTCCTTTGACGTGAAACAAAGACCTAAGTTTATT  400

seq1  AAAGCTGTCAGTTCTTCAAGAGGATATTAATTTTTTATAAATATTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCAGTTCTTCAAGAGGATATTAATTTTTTATAAATATTTTCAT  450

seq1  AAATATATATTATAAATATAAAAGTATTCATTTGTAACAAGCTATTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATATTATAAATATAAAAGTATTCATTTGTAACAAGCTATTCCCT  500

seq1  TGATGTTTACAAAACTAGAGCCTTCACTAGAAATTCACTTTCCCTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTACAAAACTAGAGCCTTCACTAGAAATTCACTTTCCCTAAATA  550

seq1  CAACAAACCAATTATTAGGAAGCTATTACTAAGGCCCAAAGTTTATGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACCAATTATTAGGAAGCTATTACTAAGGCCCAAAGTTTATGGTA  600

seq1  GTCTCCATTTACCCTTTGTTATCTGTTTACTCCTATCATGTTCAAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTTACCCTTTGTTATCTGTTTACTCCTATCATGTTCAAGCTCC  650

seq1  TAAGAACTACTCCTTTTTTCCCTCTCCAACAGTTTTTCCCGGAATATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTACTCCTTTTTTCCCTCTCCAACAGTTTTTCCCGGAATATTGT  700

seq1  CTTCAGCCTAGCTCCTTTCACTTTCACAGTGTCATCTATGACTTTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTAGCTCCTTTCACTTTCACAGTGTCATCTATGACTTTCCACA  750

seq1  GCCTTATAAATCATTCTTCCCCATTCACTGACTATTATTCCATGGTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATAAATCATTCTTCCCCATTCACTGACTATTATTCCATGGTGTGG  800

seq1  GTAGACCACAGCTTCCCTGTTTGTCTAGTGAAGGATACCATGGTAGC-TC  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGACCACAGCTTCCCTGTTTGTCTAGTGAAGGATACCATGGTAGCTTC  850

seq1  TGTGTTAGAGTAATTATGTACAATGGTAGAGAAGATCTTCCCATGAAGAG  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAGTAATTATGTACAATGGTAGAGAAGATCTTCCCATGAAGAG  900

seq1  AGTGTAAAGAAAAGCAATGC-TGCAGGTGCCCAGGGATAAAGCTGGCAGG  948
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AGTGTAAAGAAAAGCAATGCTTGCA-GTGCCCAGGGATAAAGCTGGCAGG  949

seq1  AATTATTGCAAGGGTAAAGC-TCTT-GACATTCTCACTTGATGTCTACAA  996
      |||||||||||||||||||| |||| ||||||||||||||||||||||||
seq2  AATTATTGCAAGGGTAAAGCTTCTTGGACATTCTCACTTGATGTCTACAA  999

seq1  AACAGCAAAATTA-TTTTCAATAGAAAC--TTCTGTCACAACATATGTTA  1043
      ||||||||||||| ||||||||||||||  | ||||||||||||||||||
seq2  AACAGCAAAATTATTTTTCAATAGAAACCTTCCTGTCACAACATATGTTA  1049

seq1  T-CTAACCATG-AACTTATAACGTGTTTCTTAAAATGGAA-TGCCCATGT  1090
      | ||| ||||| ||||||||||||||||||| |||||||| |||||||||
seq2  TCCTACCCATGAAACTTATAACGTGTTTCTT-AAATGGAATTGCCCATGT  1098

seq1  CAAAATATACATTCACCCAGGACTTTACCCAGGGCTTCC-TCTGTGTTCT  1139
      | || ||||||||   ||||||||||||||| ||||||| | ||||||||
seq2  C-AATTATACATTTCACCAGGACTTTACCCA-GGCTTCCTTTTGTGTTCT  1146

seq1  AAGACCATTTGATGGAAAATAATGACCAGTTTACCGAACAATGAGAGGTT  1189
      |  |||||| ||| ||||||||||||| | ||||||| || ||| |||||
seq2  AGAACCATTGGAT-GAAAATAATGACC-GGTTACCGACCAGTGA-AGGTT  1193

seq1  ATGTTGTAAGAATGCAAT-GTAGG  1212
      ||||||||  |||||||| |||||
seq2  ATGTTGTAGAAATGCAATGGTAGG  1217

seq1: chr4_24808506_24809652
seq2: B6Ng01-346O04.g_69_1204 (reverse)

seq1  AAGCTCAAGTAAAATGCAGAAAAAGGTGTCTACAGAGTGCTCGGTCAGGA  50
      ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||
seq2  AAGCTCAAGTAAAATGCAG-AAAAGGT-TCTACAGAGTGCTCGTTCA-GA  47

seq1  ATGGGACATCTGTA-TCCACAGGCCCTCTTCCCAAGGTTCAGGGACCATG  99
       ||| ||||||||| || |||||||||||| |||||| ||| ||||||||
seq2  TTGGAACATCTGTATTCAACAGGCCCTCTT-CCAAGG-TCAAGGACCATG  95

seq1  TCAGAAG-AGGGCACCTGAGAATTGTAAAAATTATATTATATTAATTATT  148
      ||||||| |||||| ||||| ||||||||||||||| |||||| ||||||
seq2  TCAGAAGAAGGGCAACTGAG-ATTGTAAAAATTATA-TATATT-ATTATT  142

seq1  ATATTAATAACAATCTAAAATATTAATTTTTACAGTTTAAAGAATCAA-C  197
      ||| |||||||||||| ||||||  ||||||||||||| ||||||||| |
seq2  ATA-TAATAACAATCT-AAATAT--ATTTTTACAGTTT-AAGAATCAACC  187

seq1  CAAACCTAAGCATTAGTAGTAAAATGTTGCTTATTGTCTTAGGGTTTTCA  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAACCTAAGCATTAGTAGTAAAATGTTGCTTATTGTCTTAGGG-TTTCA  236

seq1  TTGCTGTGAAGAAACACCATGACCAAGACAACTCTTATAAAGGACAACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAAGAAACACCATGACCAAGACAACTCTTATAAAGGACAACAT  286

seq1  TTAATTGGGGCTGGCTTACAGGTTCTGAGGTTCTGCTCATTATCATCATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGGGCTGGCTTACAGGTTCTGAGGTTCTGCTCATTATCATCATG  336

seq1  GTAGGAAGTATGGCAGGGTCCAAGAAGGCATGGCACTGGAGGAGCTGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGTATGGCAGGGTCCAAGAAGGCATGGCACTGGAGGAGCTGAGA  386

seq1  GTTTTACTTCTTGTACTGCAGTCAACCAGGAGAAGACGACTGTGTCTCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTCTTGTACTGCAGTCAACCAGGAGAAGACGACTGTGTCTCAT  436

seq1  ATTGGGCAGAGCTTGAACACATATATTACCTCAAAGCCCTGCCTCCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAGAGCTTGAACACATATATTACCTCAAAGCCCTGCCTCCACAG  486

seq1  TGACACGCCTTCTCCAACAAGACCAAATCTCCCAATAGTGCCACTCCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACGCCTTCTCCAACAAGACCAAATCTCCCAATAGTGCCACTCCCTG  536

seq1  GGCCAAACATATTCAAAGCACCATACATACATTGAATAAATATTGCATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACATATTCAAAGCACCATACATACATTGAATAAATATTGCATAT  586

seq1  TTACTATATGCCAGTCCTTCCACTTCAAATGGATTGAGTCTCATAGAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATATGCCAGTCCTTCCACTTCAAATGGATTGAGTCTCATAGAACC  636

seq1  CTTAAAAAGTGAATAGTATTTATGTAGTAGAGGAAACTGTGTATCAAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGTGAATAGTATTTATGTAGTAGAGGAAACTGTGTATCAAAGA  686

seq1  TGGTAAGAACTTACTTCAAAGAACCATAAGTCAGGAAGTCATATGACCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAACTTACTTCAAAGAACCATAAGTCAGGAAGTCATATGACCAA  736

seq1  CATCAGGTCTGTCTGTGGCCAGCCTCATGCATATGCCTTGGATGCTACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTCTGTCTGTGGCCAGCCTCATGCATATGCCTTGGATGCTACAC  786

seq1  AAACAACCACAGAGACAACAAGAGTAGAGAGAAAGGATTACACTTTCGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCACAGAGACAACAAGAGTAGAGAGAAAGGATTACACTTTCGAA  836

seq1  GACAGATACACAGTGTGAACAACACAGTTTGGCTTTTCAAAGCTCTTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACACAGTGTGAACAACACAGTTTGGCTTTTCAAAGCTCTTCTA  886

seq1  GAATTTCTGGAATGTAAATTCCATGCTTTTATGGTGTTTTAAATAAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTGGAATGTAAATTCCATGCTTTTATGGTGTTTTAAATAAAAAG  936

seq1  TAGTTCTTGAATGTTTGCTTCTCATAGTATTTCTCCTTGCCAAAAATTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTGAATGTTTGCTTCTCATAGTATTTCTCCTTGCCAAAAATTTC  986

seq1  CTTTGCAAAGAACAAGATACAGAGAGTTGCTGTGTTGATTTAACTGTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAAGAACAAGATACAGAGAGTTGCTGTGTTGATTTAACTGTTAT  1036

seq1  GAGCAGAGCAAAATTACCTCACTGCTATTAAAACCAAAACTGTTATCAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCAAAATTACCTCACTGCTATTAAAACCAAAACTGTTATCAAA  1086

seq1  AGATGTTCCTTCTTTCATAACAAGCAAGTCTGTAAGGATGTGAAGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCTTCTTTCATAACAAGCAAGTCTGTAAGGATGTGAAGAATTC  1136