BAC Information

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BAC

Clone NameB6Ng01-347I11
Chromosome4 (Build37)
Map Location 122,867,536 - 122,994,662
singlet/doubletdoublet
Overlap geneHpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie
Downstream geneOxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347I11.bB6Ng01-347I11.g
ACCGA129103GA129104
length1,1351,063
definitionB6Ng01-347I11.b B6Ng01-347I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,993,287 - 122,994,662)(122,867,536 - 122,868,607)
sequence
gaattcaaggccagcctggtctatgaagtgtgttccaggacagccagggc
tacacagagaaaccctgtcttgaaactgcccctcacctcctatcccccaa
aagatatgtggggttatagtgagactgattgaggaagttactgtttgcaa
tcctgactcctgtgaaatgtttctcaagtctttcaggttatcactagcag
ggatgcctgtggctacggcggtccctggccccgacacatcagacctggcc
agagtacttagattggtctccggacaaggaaacaggttcataggtgccat
gctaccatccacaagtcaagtccccgaacttccctttccgttgtctctgt
ctctatctcccagggcacagcatggatcctggcctggctggtctgcttgg
acgacaagcaccacgctccagacagcctttcatggtaaccttcttcaggg
ccagccagagtcctgtgcgggcccctcgggcagcgagaccactgaagagg
aggcagccaaagaaaacgaacgagcttccgcaccccaacaaactcccagg
gatctttggtgagggtggggttgagcctcctgggaggcctctttacagag
tggtagccttcaagtaggtctgattggagacccttgacctttggggtgtg
cctggctaggggagagggctgcagaggaaagcagaagctgtgtgtgccct
ggggtcctgttggggtgttctctggagcgtctggaggccccccaggcagc
aaggtgagagatcttgctgaacacagccatagcctgtggtgatggagcca
cagcaggactgttgggctgggtcacggcacgagcagggatccagaaatgg
gacctgggattccaggcctttagtttcctcttgtccttcattgtaatgtg
cctcctgtcacatcaccactgggagtacccatggcaactctgtagggcag
gacccctgaatagactgtgccttctcgtccctgcagatgatggccacggt
ttccgcggcagagaggtttgccgcagcatgagctctacgtcagcttcgtg
accttggctggctggtaatttctggcctttcctctgccggctacctgcag
accttggtggcctccagggggggggggggggatga
gaattcaaagccagcctggtctgcatggtgagttcaaatacagcctggtc
tacatagcgagttccaggcccctcagagttacatgattggaccctgtgag
gtcagagaacaacttggtggagtcagttctttccttccacctttaggcag
gttctggagaccaaacacgggtcatcaggcttgtgtagcgagtacctgta
cccgctaagccagccagccctaaaaagccagtcttaacggccctactctc
cttctagtgtctccaccctcctccagtgtgcccccagtccaccccagatc
ccttgtattcttccccagtcctccctgccagttgggtgttcacacctccg
tcttcgctccatcaggctatctataagatggtgggcaccgtgatcatgat
gcgcatgaaccaggatgggctcacaccccagcagcgtgtggacaagatct
tcaagaagatggaccaggataaggatgaccagattacgctggaggagttc
aaggaggcggccaagagtgacccgtccatcgtgttgctcctgcagtgtga
catgcagaagtagaggccggtgaggggcagggcccctggccaggaaaggc
atggcaaccttccaacctgatgtcctctctgctggcccacccccgggggg
aggggcgttccagcctcactctctagctcacccactcctctgtccaagcc
tttctctcctcagtcaagttcctcgagcgaccaccacctcattctgtaaa
agagacaggtcctctcaagtagcctgtcctcagatagtctgtcactagct
ccacctctagccttggcctagaaccaacatcctttgggcttaggagagtt
ggcttttgaccccagaggcgaggttaaagaaggggctgaggacttgcttt
gcaatcctgttgtcccaggattatggtccaaataaacagcatggtcccac
aaggcccccagtcaaagggccaaacgggtctgtccgggctatcgggattc
cccgagagtggctctgccctgctccctgctctactggccctctgccccag
tcttgaacgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122993287_122994662
seq2: B6Ng01-347I11.b_45_1179 (reverse)

seq1  TCATCCCTCAGTGACCCTCTCCTCAGAAGGCAAAGCTGGACCCCAGCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTACACCCTCCTCTCCTGCTTCCTCCACAGCTGCCCCTATGCCTCCTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCAGCTGTAGCAGGAAGAGCCCAGAGGCCCTGCCCACCCAGCCTCAGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTGTTGGAGTGCTGACGGCTTACTGGGCAGAGCCCACTGACCGCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCATTTTCATAACTTTGATGCACATTAAAGGCACAGTAGCTCCACACCCC  250
                                              ||  | ||||
seq2  ----------------------------------------TCATCCCCCC  10

seq1  CCCCCCCCCTGGAGG-CACCAAGGTCTGCAGGTAGCAGGCAGAGGAAAGG  299
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CCCCCCCCCTGGAGGCCACCAAGGTCTGCAGGTAGCCGGCAGAGGAAAGG  60

seq1  -CAGAAATTACCAGCCAGCCAAGGTCACGGAAGCTGACGTAGAGCTCATG  348
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAGAAATTACCAGCCAGCCAAGGTCAC-GAAGCTGACGTAGAGCTCATG  109

seq1  CCTGCGGCAAACCTCTCTGCCGCGGGAACCGTGGCCATCATCTGCAGGGA  398
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -CTGCGGCAAACCTCTCTGCCGCGGAAACCGTGGCCATCATCTGCAGGGA  158

seq1  CGAGAAGGCACAGTCTATTCAGGGGTCCTGCCCTACAGAGTTGCCATGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGGCACAGTCTATTCAGGGGTCCTGCCCTACAGAGTTGCCATGGG  208

seq1  TACTCCCAGTGGTGATGTGACAGGAGGCACATTTACAATGAAGGACAAGA  498
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACTCCCAGTGGTGATGTGACAGGAGGCACA-TTACAATGAAGGACAAGA  257

seq1  GGAAACTAAAGGCCTGGAATCCCAGGTCCCATTTCTGGATCCCTGCTCGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTAAAGGCCTGGAATCCCAGGTCCCATTTCTGGATCCCTGCTCGT  307

seq1  GCCGTGACCCAGCCCAACAGTCCTTCTGTGGCTCCATCACCACAGGCTAT  598
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCGTGACCCAGCCCAACAGTCCTGCTGTGGCTCCATCACCACAGGCTAT  357

seq1  GGCTGTGTTCAGCAAGATCTCTCACCTTGCTGCCTGGGGGGCCTCCAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTTCAGCAAGATCTCTCACCTTGCTGCCTGGGGGGCCTCCAGAC  407

seq1  GCTCCAGAGAACACCCCAACAGGACCCCAGGGCACACACAGCTTCTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAGAACACCCCAACAGGACCCCAGGGCACACACAGCTTCTGCTT  457

seq1  TCCTCTGCAGCCCTCTCCCCTAGCCAGGCACACCCCAAAGGTCAAGGGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCAGCCCTCTCCCCTAGCCAGGCACACCCCAAAGGTCAAGGGTC  507

seq1  TCCAATCAGACCTACTTGAAGGCTACCACTCTGTAAAGAGGCCTCCCAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCAGACCTACTTGAAGGCTACCACTCTGTAAAGAGGCCTCCCAGG  557

seq1  AGGCTCAACCCCACCCTCACCAAAGATCCCTGGGAGTTTGTTGGGGTGCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAACCCCACCCTCACCAAAGATCCCTGGGAGTTTGTTGGGGTGCG  607

seq1  GAAGCTCGTTCGTTTTCTTTGGCTGCCTCCTCTTCAGTGGTCTCGCTGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCGTTCGTTTTCTTTGGCTGCCTCCTCTTCAGTGGTCTCGCTGCC  657

seq1  CGAGGGGCCCGCACAGGACTCTGGCTGGCCCTGAAGAAGGTTACCATGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGGCCCGCACAGGACTCTGGCTGGCCCTGAAGAAGGTTACCATGAA  707

seq1  AGGCTGTCTGGAGCGTGGTGCTTGTCGTCCAAGCAGACCAGCCAGGCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCTGGAGCGTGGTGCTTGTCGTCCAAGCAGACCAGCCAGGCCAG  757

seq1  GATCCATGCTGTGCCCTGGGAGATAGAGACAGAGACAACGGAAAGGGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGCTGTGCCCTGGGAGATAGAGACAGAGACAACGGAAAGGGAAG  807

seq1  TTCGGGGACTTGACTTGTGGATGGTAGCATGGCACCTATGAACCTGTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGACTTGACTTGTGGATGGTAGCATGGCACCTATGAACCTGTTTC  857

seq1  CTTGTCCGGAGACCAATCTAAGTACTCTGGCCAGGTCTGATGTGTCGGGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCGGAGACCAATCTAAGTACTCTGGCCAGGTCTGATGTGTCGGGG  907

seq1  CCAGGGACCGCCGTAGCCACAGGCATCCCTGCTAGTGATAACCTGAAAGA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACCGCCGTAGCCACAGGCATCCCTGCTAGTGATAACCTGAAAGA  957

seq1  CTTGAGAAACATTTCACAGGAGTCAGGATTGCAAACAGTAACTTCCTCAA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACATTTCACAGGAGTCAGGATTGCAAACAGTAACTTCCTCAA  1007

seq1  TCAGTCTCACTATAACCCCACATATCTTTTGGGGGATAGGAGGTGAGGGG  1298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCACTATAACCCCACATATCTTTTGGGGGATAGGAGGTGAGGGG  1057

seq1  CAGTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACACA  1348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACACA  1107

seq1  CTTCATAGACCAGGCTGGCCTTGAATTC  1376
      ||||||||||||||||||||||||||||
seq2  CTTCATAGACCAGGCTGGCCTTGAATTC  1135

seq1: chr4_122867536_122868607
seq2: B6Ng01-347I11.g_67_1129

seq1  GAATTCAAAGCCAGCCTGGTCTGCATGGTGAGTTCAAATACAGCCTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCAGCCTGGTCTGCATGGTGAGTTCAAATACAGCCTGGTC  50

seq1  TACATAGCGAGTTCCAGGCCCCTCAGAGTTACATGATTGGACCCTGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCGAGTTCCAGGCCCCTCAGAGTTACATGATTGGACCCTGTGAG  100

seq1  GTCAGAGAACAACTTGGTGGAGTCAGTTCTTTCCTTCCACCTTTAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAACAACTTGGTGGAGTCAGTTCTTTCCTTCCACCTTTAGGCAG  150

seq1  GTTCTGGAGACCAAACACGGGTCATCAGGCTTGTGTAGCGAGTACCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAGACCAAACACGGGTCATCAGGCTTGTGTAGCGAGTACCTGTA  200

seq1  CCCGCTAAGCCAGCCAGCCCTAAAAAGCCAGTCTTAACGGCCCTACTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTAAGCCAGCCAGCCCTAAAAAGCCAGTCTTAACGGCCCTACTCTC  250

seq1  CTTCTAGTGTCTCCACCCTCCTCCAGTGTGCCCCCAGTCCACCCCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTGTCTCCACCCTCCTCCAGTGTGCCCCCAGTCCACCCCAGATC  300

seq1  CCTTGTATTCTTCCCCAGTCCTCCCTGCCAGTTGGGTGTTCACACCTCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATTCTTCCCCAGTCCTCCCTGCCAGTTGGGTGTTCACACCTCCG  350

seq1  TCTTCGCTCCATCAGGCTATCTATAAGATGGTGGGCACCGTGATCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCTCCATCAGGCTATCTATAAGATGGTGGGCACCGTGATCATGAT  400

seq1  GCGCATGAACCAGGATGGGCTCACACCCCAGCAGCGTGTGGACAAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGAACCAGGATGGGCTCACACCCCAGCAGCGTGTGGACAAGATCT  450

seq1  TCAAGAAGATGGACCAGGATAAGGATGACCAGATTACGCTGGAGGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGATGGACCAGGATAAGGATGACCAGATTACGCTGGAGGAGTTC  500

seq1  AAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTCCTGCAGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTCCTGCAGTGTGA  550

seq1  CATGCAGAAGTAGAGGCCGGTGAGGGGCAGGGCCCCTGGCCAGGAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAAGTAGAGGCCGGTGAGGGGCAGGGCCCCTGGCCAGGAAAGGC  600

seq1  ATGGCAACCTTCCAACCTGATGTCCTCTCTGCTGGCCCACCCCCGGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACCTTCCAACCTGATGTCCTCTCTGCTGGCCCACCCCCGGGGGG  650

seq1  AGGGGCGTTCCAGCCTCACTCTCTAGCTCACCCACTCCTCTGTCCAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGTTCCAGCCTCACTCTCTAGCTCACCCACTCCTCTGTCCAAGCC  700

seq1  TTTCTCTCCTCAGTCAAGTTCCTCGAGCGACCACCACCTCATTCTGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTCAGTCAAGTTCCTCGAGCGACCACCACCTCATTCTGTAAA  750

seq1  AGAGACAGGTCCTCTCAAGTAGCCTGTCCTCAGATAGTCTGTCACTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGTCCTCTCAAGTAGCCTGTCCTCAGATAGTCTGTCACTAGCT  800

seq1  CCACCTCTAGCCTTGGCCTAGAACCAACATCCTTTGGGCTTAGGAGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTAGCCTTGGCCTAGAACCAACATCCTTTGGGCTTAGGAGAGTT  850

seq1  GGCTTTTGACCCCAGAGGCGAGGTT-AAGGAGGGGCTGAGGACTTGCTTT  899
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GGCTTTTGACCCCAGAGGCGAGGTTAAAGAAGGGGCTGAGGACTTGCTTT  900

seq1  GCAATCCTGTTGTTCCCAGGATTATGGTCCAAATAAACAGCATGGTCCCA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTGTTG-TCCCAGGATTATGGTCCAAATAAACAGCATGGTCCCA  949

seq1  C-AGGCCCCCAGTCAAAGGGCCAAACCGGGTCTGTCCCGGGCTATCGGGA  998
      | ||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  CAAGGCCCCCAGTCAAAGGGCCAAA-CGGGTCTGT-CCGGGCTATCGGGA  997

seq1  TTCCCCGAGAGGTGGTCTCTGCCCTGCTCCCTTGCTCTACCTGGCCCCTC  1048
      |||||||||| |||| ||||||||||||||| ||||||| |||| |||||
seq2  TTCCCCGAGA-GTGG-CTCTGCCCTGCTCCC-TGCTCTA-CTGG-CCCTC  1042

seq1  TGGCCCCAGTCTTTGGAACGTTCA  1072
      | |||||||||||  |||||||||
seq2  T-GCCCCAGTCTT--GAACGTTCA  1063