BAC Information

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BAC

Clone NameB6Ng01-347N03
Chromosome4 (Build37)
Map Location 10,116,943 - 10,241,688
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N03.bB6Ng01-347N03.g
ACCGA129308GA129309
length1,0021,236
definitionB6Ng01-347N03.b B6Ng01-347N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,240,683 - 10,241,688)(10,116,943 - 10,118,180)
sequence
gaattcctctttaccttgggctaagcttctggtcaataaataagatttgc
ttggacattttcttgaatcttgctgttgtacttagtctgaaatgtaaaga
cccactcttccttggactataaaataagcattaaaaaaaagccatagaat
agtggggaatcccaccgaaggtctttgttacagacacaaggacaaccact
gcaaaattagggctgaaggatagctgaagaacaattcatgaattttgctt
aaatattgcccaaaattgatgggtctaattttctttttcaattatattaa
agtcaggtttattgcaaagctgcactcaggcaagtccaggcaagtccagt
ggccccaaggattgaggccaggggaatctcaatggggagggatagagaag
agaaagggagaaaggatgcatgcatgtgtgtgcatgtgcacaaatgagtt
cgcatgtgcgcgcgcgcgcgcgcacacacacacacacacacacacacaca
cacacacacacacacacacacacacgagagaaagagagagagagagagag
agagagagagagagagagagagagagagagagtttttaaatgtagtttta
cctttatagagactcagctgtggtattaaggaatttctgagcactgaaga
actttatctagtgctagacaaaatagtagacacaaatcgttatgaaactt
tttgctcacttgaggggtgggggtgggggactcccaagctgctccagaag
gacgtcgggttcagctttgggaatgtcttgatgaagtcagcttactctac
attctggtggcacttaaatgtttttctaaataattttactattttacagg
ttttgttattgttgtttttgttgtcttgttggtagttgggttggttgggt
ttgttgtttttgagacatagttttgccaatagcctggcagcctagaattg
ccatatatatcaaagctgacattaaactgtggtaatctcctggctctgcc
tc
gaattcagcagggtggatctttagacagtgtcccttgggtaatgtcccta
gataatttgccccaagagcttcttagactgttgacacttttcataatgtt
taagaagatggtttctcaaaaaaaaaactcaaaaccacaagcaagtcaaa
gaaagttcgagtgtttatgctccactgagtattagcaattcgcagaaatg
ctcactagaatctctatcctctaccataagttttttcctacatgtccagc
tgctccactctctctgtcccactcctgccccgcccccattcctgcacctc
tctctgattggacctgatgaagtatgtcaacttggctttgctcccaggaa
aaaagaaaactccctcttctaaggatggacaggaagctttggaaattcag
ctgataaaggcctttctcaatcttaaatttgtgagttgagtctctgaaca
cagctatctcagtatttatcatgacacatattaataactagaactcatga
agtatctatttggtccttttcactcgctagtgagaatcacatgtgaactg
tgaggattcattttgcctccattaccacagcagctgtgtgggcagaaaga
gaaagaaaaaaaagtgaggcagctttcaaaggaggattttctaagaaaga
ttagaggagaggggactccagtggaagcgctaggcaggacaaagagcttt
gaacttcctcaagcttcccaccaaatacttcaccatgaataccttggtca
aatttgtatttgtggatcacatattacagcacaatttgttctagtctcag
tttgaagatttgaactcctgctagaggctgaaggacagcatgagcaaatc
atctatatataaggaaggatacatattcacatggaagcgtgtgcaagcac
ataagtgcacatacacacttctttaggatggaatggaaagtaaaatggag
acactgagataatggagagtcagtgactcattctagccatatacatcaaa
gaagttttcatagagaagacaaattaaaatgagcactggatgagttatat
accattgctctattcacagctgactagcaactttcctcatttcttgagtg
gtgtgaaattcacattagaacaaaggctctcaggttcatctggtcataag
atttgcctgattcactttccgaaactgctctgattcctgctttgtgtgta
tagcagttctctcaggtctctcatataaggggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10240683_10241688
seq2: B6Ng01-347N03.b_47_1048 (reverse)

seq1  GAGGCAGAGACAGGAGAATTACCACAAGTTTAATGTCAGC-TTGGTATAT  49
      ||||||||| |||||| |||||||| |||||||||||||| ||| |||||
seq2  GAGGCAGAGCCAGGAG-ATTACCAC-AGTTTAATGTCAGCTTTGATATAT  48

seq1  ATGGCAAATTCTAGGCTGGCCAGGACTATACGACAAAACTCTGTCTCAAA  99
      ||||| ||||||||||| |||||| ||||  | ||||||| |||||||||
seq2  ATGGC-AATTCTAGGCT-GCCAGG-CTAT-TGGCAAAACTATGTCTCAAA  94

seq1  AACAAACAAAACCAACCAA-CCAACTACCAACAAAGACAAC-AAAACAAC  147
      ||| |||||| |||||||| |||||||||||| |||||||| ||||||||
seq2  AAC-AACAAACCCAACCAACCCAACTACCAAC-AAGACAACAAAAACAAC  142

seq1  AATAACAAAACCTGTAAAATAGT-AAATTATTTAGAAAAACATTTAAGTG  196
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAACAAAACCTGTAAAATAGTAAAATTATTTAGAAAAACATTTAAGTG  192

seq1  CCACCAGAATGTAGAGTAAGCTGACTTCATCAAGACATTCCCAAAGCTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGAATGTAGAGTAAGCTGACTTCATCAAGACATTCCCAAAGCTGA  242

seq1  ACCCGACGTCCTTCTGGAGCAGCTTGGGAGTCCCCCACCCCCACCCCTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACGTCCTTCTGGAGCAGCTTGGGAGTCCCCCACCCCCACCCCTCA  292

seq1  AGTGAGCAAAAAGTTTCATAACGATTTGTGTCTACTATTTTGTCTAGCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAAAAAGTTTCATAACGATTTGTGTCTACTATTTTGTCTAGCAC  342

seq1  TAGATAAAGTTCTTCAGTGCTCAGAAATTCCTTAATACCACAGCTGAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAGTTCTTCAGTGCTCAGAAATTCCTTAATACCACAGCTGAGTC  392

seq1  TCTATAAAGGTAAAACTACATTTAAAAACTCTCTCTCTCTCTCTCTCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAGGTAAAACTACATTTAAAAACTCTCTCTCTCTCTCTCTCTCT  442

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGTGTGTGTGTGTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGTGTGTGTGTGTGTG  492

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCG  542

seq1  CGCACATGCGAACTCATTTGTGCACATGCACACACATGCATGCATCCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATGCGAACTCATTTGTGCACATGCACACACATGCATGCATCCTTT  592

seq1  CTCCCTTTCTCTTCTCTATCCCTCCCCATTGAGATTCCCCTGGCCTCAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCTCTTCTCTATCCCTCCCCATTGAGATTCCCCTGGCCTCAAT  642

seq1  CCTTGGGGCCACTGGACTTGCCTGGACTTGCCTGAGTGCAGCTTTGCAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGCCACTGGACTTGCCTGGACTTGCCTGAGTGCAGCTTTGCAAT  692

seq1  AAACCTGACTTTAATATAATTGAAAAAGAAAATTAGACCCATCAATTTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACTTTAATATAATTGAAAAAGAAAATTAGACCCATCAATTTTG  742

seq1  GGCAATATTTAAGCAAAATTCATGAATTGTTCTTCAGCTATCCTTCAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATTTAAGCAAAATTCATGAATTGTTCTTCAGCTATCCTTCAGCC  792

seq1  CTAATTTTGCAGTGGTTGTCCTTGTGTCTGTAACAAAGACCTTCGGTGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGCAGTGGTTGTCCTTGTGTCTGTAACAAAGACCTTCGGTGGG  842

seq1  ATTCCCCACTATTCTATGGCTTTTTTTTAATGCTTATTTTATAGTCCAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCACTATTCTATGGCTTTTTTTTAATGCTTATTTTATAGTCCAAG  892

seq1  GAAGAGTGGGTCTTTACATTTCAGACTAAGTACAACAGCAAGATTCAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGGGTCTTTACATTTCAGACTAAGTACAACAGCAAGATTCAAGA  942

seq1  AAATGTCCAAGCAAATCTTATTTATTGACCAGAAGCTTAGCCCAAGGTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCAAGCAAATCTTATTTATTGACCAGAAGCTTAGCCCAAGGTAA  992

seq1  AGAGGAATTC  1006
      ||||||||||
seq2  AGAGGAATTC  1002

seq1: chr4_10116943_10118180
seq2: B6Ng01-347N03.g_68_1303

seq1  GAATTCAGCAGGGTGGATCTTTAGACAGTGTCCCTTGGGTAATGTCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGGTGGATCTTTAGACAGTGTCCCTTGGGTAATGTCCCTA  50

seq1  GATAATTTGCCCCAAGAGCTTCTTAGACTGTTGACACTTTTCATAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTGCCCCAAGAGCTTCTTAGACTGTTGACACTTTTCATAATGTT  100

seq1  TAAGAAGATGGTTTCTCAAAAAAAAAACTCAAAACCACAAGCAAGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGATGGTTTCTCAAAAAAAAAACTCAAAACCACAAGCAAGTCAAA  150

seq1  GAAAGTTCGAGTGTTTATGCTCCACTGAGTATTAGCAATTCGCAGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCGAGTGTTTATGCTCCACTGAGTATTAGCAATTCGCAGAAATG  200

seq1  CTCACTAGAATCTCTATCCTCTACCATAAGTTTTTTCCTACATGTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAGAATCTCTATCCTCTACCATAAGTTTTTTCCTACATGTCCAGC  250

seq1  TGCTCCACTCTCTCTGTCCCACTCCTGCCCCGCCCCCATTCCTGCACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTCTCTCTGTCCCACTCCTGCCCCGCCCCCATTCCTGCACCTC  300

seq1  TCTCTGATTGGACCTGATGAAGTATGTCAACTTGGCTTTGCTCCCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATTGGACCTGATGAAGTATGTCAACTTGGCTTTGCTCCCAGGAA  350

seq1  AAAAGAAAACTCCCTCTTCTAAGGATGGACAGGAAGCTTTGGAAATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACTCCCTCTTCTAAGGATGGACAGGAAGCTTTGGAAATTCAG  400

seq1  CTGATAAAGGCCTTTCTCAATCTTAAATTTGTGAGTTGAGTCTCTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAGGCCTTTCTCAATCTTAAATTTGTGAGTTGAGTCTCTGAACA  450

seq1  CAGCTATCTCAGTATTTATCATGACACATATTAATAACTAGAACTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATCTCAGTATTTATCATGACACATATTAATAACTAGAACTCATGA  500

seq1  AGTATCTATTTGGTCCTTTTCACTCGCTAGTGAGAATCACATGTGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTATTTGGTCCTTTTCACTCGCTAGTGAGAATCACATGTGAACTG  550

seq1  TGAGGATTCATTTTGCCTCCATTACCACAGCAGCTGTGTGGGCAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTCATTTTGCCTCCATTACCACAGCAGCTGTGTGGGCAGAAAGA  600

seq1  GAAAGAAAAAAAAGTGAGGCAGCTTTCAAAGGAGGATTTTCTAAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAAAGTGAGGCAGCTTTCAAAGGAGGATTTTCTAAGAAAGA  650

seq1  TTAGAGGAGAGGGGACTCCAGTGGAAGCGCTAGGCAGGACAAAGAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAGAGGGGACTCCAGTGGAAGCGCTAGGCAGGACAAAGAGCTTT  700

seq1  GAACTTCCTCAAGCTTCCCACCAAATACTTCACCATGAATACCTTGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCTCAAGCTTCCCACCAAATACTTCACCATGAATACCTTGGTCA  750

seq1  AATTTGTATTTGTGGATCACATATTACAGCACAATTTGTTCTAGTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATTTGTGGATCACATATTACAGCACAATTTGTTCTAGTCTCAG  800

seq1  TTTGAAGATTTGAACTCCTGCTAGAGGCTGAAGGACAGCATGAGCAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGATTTGAACTCCTGCTAGAGGCTGAAGGACAGCATGAGCAAATC  850

seq1  ATCTATATATAAGGAAGGATACATATTCACATGGAAGCGTGTGCAAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATATAAGGAAGGATACATATTCACATGGAAGCGTGTGCAAGCAC  900

seq1  ATAAGTGCACATACACAC-TCTTTAGGATGGAATGGAAAGTAAAAATGGA  949
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  ATAAGTGCACATACACACTTCTTTAGGATGGAATGGAAAGT-AAAATGGA  949

seq1  GAACACTGAGAATAATGGAGAGTCAGTGACTCATTCTAGCCATATACATC  999
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  G-ACACTGAG-ATAATGGAGAGTCAGTGACTCATTCTAGCCATATACATC  997

seq1  AAAGAAGTTTTCATAGAGAAGACAAAATTAAAAATGAGCAACTGGATGAG  1049
      ||||||||||||||||||||||||||  | ||||||||| ||||||||||
seq2  AAAGAAGTTTTCATAGAGAAGACAAA--TTAAAATGAGC-ACTGGATGAG  1044

seq1  -TATATACCATTGCTCTAATTCACAGCTGACTAGCAACTTTCCTCATT--  1096
       |||||||||||||||| ||||||||||||||||||||||||||||||  
seq2  TTATATACCATTGCTCT-ATTCACAGCTGACTAGCAACTTTCCTCATTTC  1093

seq1  CTGAGT-GTGTGAAAATACACA-TAGAGCATAGG--CTCAGTTCAATCTG  1142
       ||||| ||||| |||| |||| |||| || |||  ||||| |  |||| 
seq2  TTGAGTGGTGTG-AAATTCACATTAGAACAAAGGCTCTCAGGTTCATCT-  1141

seq1  GGTCATAAGATATGCTTGATTCACTTTCCAAAACTGCTCTTGATTTCCCC  1192
      ||||||||||| ||| ||||||||||||| ||||||||| |||||     
seq2  GGTCATAAGATTTGCCTGATTCACTTTCCGAAACTGCTC-TGATT-----  1185

seq1  CTTGCTTTGTGTG-ATAGCAGTTCT-TCAGGT-TCTC--ATAAAGGGAGG  1237
      | ||||||||||| ||||||||||| |||||| ||||  |||| ||||||
seq2  CCTGCTTTGTGTGTATAGCAGTTCTCTCAGGTCTCTCATATAAGGGGAGG  1235

seq1  C  1238
      |
seq2  C  1236