BAC Information

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BAC

Clone NameB6Ng01-348E13
Chromosome4 (Build37)
Map Location 136,027,144 - 136,134,887
singlet/doubletdoublet
Overlap geneLuzp1, Aof2
Upstream geneNpal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540
Downstream geneLOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348E13.bB6Ng01-348E13.g
ACCGA129623GA129624
length1,0821,075
definitionB6Ng01-348E13.b B6Ng01-348E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,027,144 - 136,028,206)(136,133,821 - 136,134,887)
sequence
gaattcagatcacctaggaagatttagcaaccccagatgaggggaggcta
tttcctctgggaaaatctgtacagtatgttccagattgccttctgtcact
ttgtgtgcagctttggtggcatttgtgtggttaaattctataaccccctt
agaaaattcttctcttgttagaaataattgttttgcacagaatttcccct
tggggcagattaaggttttgctcaatttactcggaagaattttccaggtt
tctaaaattaaatcacttttctaaacatagcagctaaagtttgaaaaact
agaaatagtgggatgggtaagggatggattggactatgaaggcaggaagt
ataggttcacagctgaccatccactaataacatggagtttaaaaaagatt
tgtcttcctgtgtatgggaatgctcacatgagttcaggtgtttctgaggc
cagatccctctcaagtttttgttataggcagctatggttgggagatgcct
gacatgtgtgctggaaactgaactttggtcttctggagagcaagaagggt
tcttaaacattttgccctctctctagttcccataacatggattgtttgtt
aattagccttcctccatatttttttttaaagcctgaagaccaagaaagga
aactcatactgttgagttgtcattcaataatactgagtattgagtatatt
tacgtagtcattgcaagcctgtgaagtgctagttgagcaaattgaaggtc
agaatgtaaaagtgactatcccaagctcatgcatataatcagtaagtagt
ggtactggaattcaaaagtcaagtcagcttgggaaagcccacagtttctc
tccaccatgctgccttgggaactgaaggacttagtttctgcattttttaa
gtcagccccactgggtcactgaggtccttagagtaagtcactcaagtaat
tttaccaataagtagctctttcttccagaagtgttgttcagtatgctttt
gggtggcatgtttttttggtacaaagactaatataaaaatatattacttt
tatatagtagaatgctaaatgtttttgcttat

gaattctgttaatgttatgttgggtttacagtggggtttggtcatatagc
ccaggttggcgttacaatatgcaccatcatggtcagctgagaaatggagt
ttaatgcagatttaatagtgatcattattttcatgttaatagtaaacaca
tgaacattaagtatttggcctagacagtttatatttgtcattataaggat
ttgagatatgtcattataaggatttgagatattttagagtttgatttttg
ttttttgttcgtttgttttggtttggggataggagacagggacatcaaag
ctgtataattttagaaaaattctgtcctcgctagcaccttctccaccact
atttcctcctcaagtaatatcacatgctaccagcaaaaatatagctctta
tttttatcccttaaggcatatttagttatctgacaatctttggtttttag
attggagttagttaaattaggattgagtattgattttatttagtaatgta
gaacacagggcttttgcccttagatctagtggtggatggtgcttctcttt
tagaatagctatttaaaatgggtggcctctggcagcatgggcagtttcac
ttggcctttttcttaactactaatttctctaagtggtgactgttgtttga
ttgtcggtggaaacaggtcccttaggagagtagctacagtcttcaaggta
aagttgtacctgctgtgttctttactacaaataaatcgtctttactaaac
tcactcttccagcactgcttctaacttcatgacatttactattctatgta
ggagctttggttttgtgttgttactgttttacttttgatactgaatctag
aaagtctaagattgtaccttttcttgtccctttcctgtgtccagagtgga
agttgggctagggcttggttcctagggtcagctaagcacgcgcacttctt
tctcagctgcatcgggtcttgttctggctgctcagatgctgctgtagtgt
aagaatatttgagtttaataactcctagcgtgtgctgacttaacagacca
tggagttatcgactagcttatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136027144_136028206
seq2: B6Ng01-348E13.b_50_1131

seq1  GAATTCAGATCACCTAGGAAGATTTAGCAACCCCAGATGAGGGGAGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCACCTAGGAAGATTTAGCAACCCCAGATGAGGGGAGGCTA  50

seq1  TTTCCTCTGGGAAAATCTGTACAGTATGTTCCAGATTGCCTTCTGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGGGAAAATCTGTACAGTATGTTCCAGATTGCCTTCTGTCACT  100

seq1  TTGTGTGCAGCTTTGGTGGCATTTGTGTGGTTAAATTCTATAACCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCAGCTTTGGTGGCATTTGTGTGGTTAAATTCTATAACCCCCTT  150

seq1  AGAAAATTCTTCTCTTGTTAGAAATAATTGTTTTGCACAGAATTTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCTTCTCTTGTTAGAAATAATTGTTTTGCACAGAATTTCCCCT  200

seq1  TGGGGCAGATTAAGGTTTTGCTCAATTTACTCGGAAGAATTTTCCAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGATTAAGGTTTTGCTCAATTTACTCGGAAGAATTTTCCAGGTT  250

seq1  TCTAAAATTAAATCACTTTTCTAAACATAGCAGCTAAAGTTTGAAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTAAATCACTTTTCTAAACATAGCAGCTAAAGTTTGAAAAACT  300

seq1  AGAAATAGTGGGATGGGTAAGGGATGGATTGGACTATGAAGGCAGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGTGGGATGGGTAAGGGATGGATTGGACTATGAAGGCAGGAAGT  350

seq1  ATAGGTTCACAGCTGACCATCCACTAATAACATGGAGTTTAAAAAAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCACAGCTGACCATCCACTAATAACATGGAGTTTAAAAAAGATT  400

seq1  TGTCTTCCTGTGTATGGGAATGCTCACATGAGTTCAGGTGTTTCTGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTGTGTATGGGAATGCTCACATGAGTTCAGGTGTTTCTGAGGC  450

seq1  CAGATCCCTCTCAAGTTTTTGTTATAGGCAGCTATGGTTGGGAGATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTCTCAAGTTTTTGTTATAGGCAGCTATGGTTGGGAGATGCCT  500

seq1  GACATGTGTGCTGGAAACTGAACTTTGGTCTTCTGGAGAGCAAGAAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTGTGCTGGAAACTGAACTTTGGTCTTCTGGAGAGCAAGAAGGGT  550

seq1  TCTTAAACATTTTGCCCTCTCTCTAGTTCCCATAACATGGATTGTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACATTTTGCCCTCTCTCTAGTTCCCATAACATGGATTGTTTGTT  600

seq1  AATTAGCCTTCCTCCATATTTTTTTTTAAAGCCTGAAGACCAAGAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCTTCCTCCATATTTTTTTTTAAAGCCTGAAGACCAAGAAAGGA  650

seq1  AACTCATACTGTTGAGTTGTCATTCAATAATACTGAGTATTGAGTATA-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTCATACTGTTGAGTTGTCATTCAATAATACTGAGTATTGAGTATATT  700

seq1  TACGTAGTCATTGCAAGCCTGTGAAGTGCTAGTTGAGCAAATTGAAGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAGTCATTGCAAGCCTGTGAAGTGCTAGTTGAGCAAATTGAAGGTC  750

seq1  AGAATGTAAAAGTGACTATCCCAAGCTCATGCATATAATCAGTAAGTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAAAAGTGACTATCCCAAGCTCATGCATATAATCAGTAAGTAGT  800

seq1  GGTACTGGAATTCAAAAGTCAAGTCAGCTT-GGAAAGCCCACAG-TTCTC  847
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GGTACTGGAATTCAAAAGTCAAGTCAGCTTGGGAAAGCCCACAGTTTCTC  850

seq1  TCCACCATGCTGCCTTGGGAACTGAGGAACTTAGTTTCTGCA-TTTTTAA  896
      ||||||||||||||||||||||||| | |||||||||||||| |||||||
seq2  TCCACCATGCTGCCTTGGGAACTGAAGGACTTAGTTTCTGCATTTTTTAA  900

seq1  GTCAG-CCCACTGGGTCACTGAGGTCCTTAGAGTAAGTCACTCAAGT-AT  944
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCAGCCCCACTGGGTCACTGAGGTCCTTAGAGTAAGTCACTCAAGTAAT  950

seq1  TTTA-CAATAAGTAG--CCTTCTTCCAG-AGTGTTG-TCAGTATGCTTT-  988
      |||| ||||||||||  | ||||||||| ||||||| |||||||||||| 
seq2  TTTACCAATAAGTAGCTCTTTCTTCCAGAAGTGTTGTTCAGTATGCTTTT  1000

seq1  -GGTGGCATG-TTTTTTGGTACAAAGACT-ATATAAAAATATA-TAC-TT  1033
       ||||||||| |||||||||||||||||| ||||||||||||| ||| ||
seq2  GGGTGGCATGTTTTTTTGGTACAAAGACTAATATAAAAATATATTACTTT  1050

seq1  TATATAGTAG-ATGCTTAATG-TTTTGCTTAT  1063
      |||||||||| ||||| |||| ||||||||||
seq2  TATATAGTAGAATGCTAAATGTTTTTGCTTAT  1082


seq1: chr4_136133821_136134887
seq2: B6Ng01-348E13.g_67_1141 (reverse)

seq1  TTTGATAAGCTAGTCGATAAACTCAT-GTCTGTT-AGTCAGGCACACGCT  48
      ||||||||||||||||||||   ||| ||||||| ||||| |||||||||
seq2  TTTGATAAGCTAGTCGATAACTCCATGGTCTGTTAAGTCA-GCACACGCT  49

seq1  -GGGGTTAT--AACTCAAATATCTTAACACTACAGCAGCATCTGAGCAGC  95
       || |||||  |||||||||||  | ||||||||||||||||||||||||
seq2  AGGAGTTATTAAACTCAAATATTCTTACACTACAGCAGCATCTGAGCAGC  99

seq1  CAGA--CAGGCCCGGTGCAGCTTGGGAAG-AGTGCGCGTGCTTAGCTGGC  142
      ||||   || |||| |||||||  | ||| |||||||||||||||||| |
seq2  CAGAACAAGACCCGATGCAGCTGAGAAAGAAGTGCGCGTGCTTAGCTGAC  149

seq1  CCTAGGAACCAAGCCCTAG-CCAACTTCCACTCTGGACACAGGAAAGGGA  191
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTAGGAACCAAGCCCTAGCCCAACTTCCACTCTGGACACAGGAAAGGGA  199

seq1  CAAGAAAAGGTACAATCTTAGACTTTCTAGATTCAGTATCAAAAGTAAAA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGGTACAATCTTAGACTTTCTAGATTCAGTATCAAAAGTAAAA  249

seq1  CAGTAACAACACAAAACCAAAGCTCCTACATAGAATAGTAAATGTCATGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAACACAAAACCAAAGCTCCTACATAGAATAGTAAATGTCATGA  299

seq1  AGTTAGAAGCAGTGCTGGAAGAGTGAGTTTAGTAAAGACGATTTATTTGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGCAGTGCTGGAAGAGTGAGTTTAGTAAAGACGATTTATTTGT  349

seq1  AGTAAAGAACACAGCAGGTACAACTTTACCTTGAAGACTGTAGCTACTCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAACACAGCAGGTACAACTTTACCTTGAAGACTGTAGCTACTCT  399

seq1  CCTAAGGGACCTGTTTCCACCGACAATCAAACAACAGTCACCACTTAGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGGACCTGTTTCCACCGACAATCAAACAACAGTCACCACTTAGAG  449

seq1  AAATTAGTAGTTAAGAAAAAGGCCAAGTGAAACTGCCCATGCTGCCAGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAGTTAAGAAAAAGGCCAAGTGAAACTGCCCATGCTGCCAGAG  499

seq1  GCCACCCATTTTAAATAGCTATTCTAAAAGAGAAGCACCATCCACCACTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCATTTTAAATAGCTATTCTAAAAGAGAAGCACCATCCACCACTA  549

seq1  GATCTAAGGGCAAAAGCCCTGTGTTCTACATTACTAAATAAAATCAATAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGGGCAAAAGCCCTGTGTTCTACATTACTAAATAAAATCAATAC  599

seq1  TCAATCCTAATTTAACTAACTCCAATCTAAAAACCAAAGATTGTCAGATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTAATTTAACTAACTCCAATCTAAAAACCAAAGATTGTCAGATA  649

seq1  ACTAAATATGCCTTAAGGGATAAAAATAAGAGCTATATTTTTGCTGGTAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATGCCTTAAGGGATAAAAATAAGAGCTATATTTTTGCTGGTAG  699

seq1  CATGTGATATTACTTGAGGAGGAAATAGTGGTGGAGAAGGTGCTAGCGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATATTACTTGAGGAGGAAATAGTGGTGGAGAAGGTGCTAGCGAG  749

seq1  GACAGAATTTTTCTAAAATTATACAGCTTTGATGTCCCTGTCTCCTATCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTTTTCTAAAATTATACAGCTTTGATGTCCCTGTCTCCTATCC  799

seq1  CCAAACCAAAACAAACGAACAAAAAACAAAAATCAAACTCTAAAATATCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAAACAAACGAACAAAAAACAAAAATCAAACTCTAAAATATCT  849

seq1  CAAATCCTTATAATGACATATCTCAAATCCTTATAATGACAAATATAAAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTTATAATGACATATCTCAAATCCTTATAATGACAAATATAAAC  899

seq1  TGTCTAGGCCAAATACTTAATGTTCATGTGTTTACTATTAACATGAAAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGGCCAAATACTTAATGTTCATGTGTTTACTATTAACATGAAAAT  949

seq1  AATGATCACTATTAAATCTGCATTAAACTCCATTTCTCAGCTGACCATGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCACTATTAAATCTGCATTAAACTCCATTTCTCAGCTGACCATGA  999

seq1  TGGTGCATATTGTAACGCCAACCTGGGCTATATGACCAAACCCCACTGTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATATTGTAACGCCAACCTGGGCTATATGACCAAACCCCACTGTA  1049

seq1  AACCCAACATAACATTAACAGAATTC  1067
      ||||||||||||||||||||||||||
seq2  AACCCAACATAACATTAACAGAATTC  1075


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