BAC Information

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BAC

Clone NameB6Ng01-349G22
Chromosome4 (Build37)
Map Location 117,931,467 - 118,067,352
singlet/doubletdoublet
Overlap genePtprf, Hyi, BC059842
Upstream geneTmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a
Downstream geneMed8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349G22.bB6Ng01-349G22.g
ACCGA130427GA130428
length9921,105
definitionB6Ng01-349G22.b B6Ng01-349G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,931,467 - 117,932,436)(118,066,243 - 118,067,352)
sequence
gaattcaacagtacctctcctcttcccaagcttggctctgggtgtaccta
atgagggactagagaatgtctgccctttgtttacctttcggcaagaaagc
tgggcagtatggtggtggcagaggcaccactccactcttccctctcacat
gcccagcacaggtcagtgtgcaggaacatttgctgcacccaggctcccat
gccaggaagactcagcctcagagggagaaaagtaaagggcagggtgacag
cacccggggcacagacaagatgaagctggaggagccaccgcaggcagagg
aacctccatcaaagttgcaacttctagggatatcctagaagggtgtctgg
ctggggttataggagatctctcatcatggccctgaatccccaggtttggc
caggaattggctatacacttccctgtttggagccctataaattctgatgt
aaaccctgggtctctttggctgtaagtatgatgccacagagctctgactc
ttagctgatttttgggggggggggttcaagacagggtttctctgtgtagc
cctggctgtcctggaattcactctgtagaccaggctggcctcaaactctg
cctgcctctgccttccaagtgctaggattaaaggcgtgcaccaccactgc
ccggctcagctgattcttgaaaggatcatatttaaacagcagcaggaaga
gaaaagaggaggggagtgaggactgaagatgcacagctttccttgggcct
ggcaccactttggaagcttaagagttaagccctgaggcctagggcaacct
tccccattccccatctagcattcagggatcccaaaggctgctagagcttc
agcttatcatcactgaccaccgcatcgggcggtgttctttctaggcttta
ctcttgtctggtcctgaacaactgggggtgcagatggaggggcggctagg
tcctggtcagagttaaagtccataggagctctcccagcctct
gaattcattccaagtgaagccaagggccatcgtgtagacagctgtaggtg
cgtggggaagggatgaagataaggaagcgaatggccaggaaaggaaatga
gtcacatggacaggtctgccgtcatccactgcagagattggcagtgagtg
tggaggctttccaggccctgagtttcagagctgtgtgactttgctgtagt
gtgtgacagtagccacagacaaaatacaaaatgaatacgtgcggctgtcc
cacaaactccactaacagaaatataggtctgggctgatttgggctgtaga
ttagaagtagatgggtccatagccttgttgttggtatcaccaaagcttat
tgtcaatgcaggctctcaggcctcacagcagacgtgtgtgttaacacaat
cccaaagggcttgtatgcacctcaaagattaagaagccttttgttagacc
tataatgacaagaagccggtggaacccttaacaaagcccgtagagaaggc
taaagagtgtttttgacctggatgaaggagggctgagtgtggtgtggcca
gctggcattgatcttagaaaggctaaaggataggtacagggtgggggtcg
atcctgggagcactgtgaccatttccctccgtggtctgggaattgggagc
agtagattcctctcctgctcttctttcctggctctgatggaacagggtct
tcccttgctctctccaggtgggaggcgtttactcctatgattgtagcttt
ggtcacgtgcctaacgtggagttgatgaagttcatcgccatggcaacgtt
tggctcctacctgtccacttgtcctgagaccgagccaggcaacctgggtc
tgactgtgtaccaccgggcgttcctgctctactcctttcctgcgcagtgg
ggaagccctgaaccctgagtactactgtggtaaggccaggcccttgttgg
tgggacaaggcagaatggcctgaagatggcatgaccttggctttgggaga
ctggtggtctaactggggctgcttctctgaactccttctctataatctca
gtgtagcccctcccatgaacatacatcgcctgaaaccatctccactttca
cttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_117931467_117932436
seq2: B6Ng01-349G22.b_47_1038

seq1  GAATTCAACAGTACCTCTCCTCTTCCCAAGCTTGGCTCTGGGTGTACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTACCTCTCCTCTTCCCAAGCTTGGCTCTGGGTGTACCTA  50

seq1  ATGAGGGACTAGAGAATGTCTGCCCTTTGTTTACCTTTCGGCAAGAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACTAGAGAATGTCTGCCCTTTGTTTACCTTTCGGCAAGAAAGC  100

seq1  TGGGCAGTATGGTGGTGGCAGAGGCACCACTCCACTCTTCCCTCTCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTATGGTGGTGGCAGAGGCACCACTCCACTCTTCCCTCTCACAT  150

seq1  GCCCAGCACAGGTCAGTGTGCAGGAACATTTGCTGCACCCAGGCTCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACAGGTCAGTGTGCAGGAACATTTGCTGCACCCAGGCTCCCAT  200

seq1  GCCAGGAAGACTCAGCCTCAGAGGGAGAAAAGTAAAGGGCAGGGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGACTCAGCCTCAGAGGGAGAAAAGTAAAGGGCAGGGTGACAG  250

seq1  CACCCGGGGCACAGACAAGATGAAGCTGGAGGAGCCACCGCAGGCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGGGGCACAGACAAGATGAAGCTGGAGGAGCCACCGCAGGCAGAGG  300

seq1  AACCTCCATCAAAGTTGCAACTTCTAGGGATATCCTAGAAGGGTGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATCAAAGTTGCAACTTCTAGGGATATCCTAGAAGGGTGTCTGG  350

seq1  CTGGGGTTATAGGAGATCTCTCATCATGGCCCTGAATCCCCAGGTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTATAGGAGATCTCTCATCATGGCCCTGAATCCCCAGGTTTGGC  400

seq1  CAGGAATTGGCTATACACTTCCCTGTTTGGAGCCCTATAAATTCTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTGGCTATACACTTCCCTGTTTGGAGCCCTATAAATTCTGATGT  450

seq1  AAACCCTGGGTCTCTTTGGCTGTAAGTATGATGCCACAGAGCTCTGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGGGTCTCTTTGGCTGTAAGTATGATGCCACAGAGCTCTGACTC  500

seq1  TTAGCTGATTTTTGGGGGGGGGGGTTCAAGACAGGGTTTCTCTGTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGATTTTTGGGGGGGGGGGTTCAAGACAGGGTTTCTCTGTGTAGC  550

seq1  CCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCTG  600

seq1  CCTGCCTCTGCCTCCCAAGTGCTAGGATTAAAGGCGTGCACCACCACTGC  650
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTTCCAAGTGCTAGGATTAAAGGCGTGCACCACCACTGC  650

seq1  CCGGCTCAGCTGATTCTTGAAAGGATCATA-TTAAACAGCAGCAGGAAGA  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCGGCTCAGCTGATTCTTGAAAGGATCATATTTAAACAGCAGCAGGAAGA  700

seq1  G-AAAGAGGAGGGGAGTGAGGACTGAAGATGCACAGC-TTCCTT-GGCCT  746
      | ||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  GAAAAGAGGAGGGGAGTGAGGACTGAAGATGCACAGCTTTCCTTGGGCCT  750

seq1  GGCACCAC-TTGGAAGC-TAAGAG-TAAGCCCTGAGGCCTAGGGCAACC-  792
      |||||||| |||||||| |||||| |||||||||||||||||||||||| 
seq2  GGCACCACTTTGGAAGCTTAAGAGTTAAGCCCTGAGGCCTAGGGCAACCT  800

seq1  TCCCCA-TCCCCATCTAGCA-TCAGGGATCCC-AAGGCTGCTAGAGCTAC  839
      |||||| ||||||||||||| ||||||||||| ||||||||||||||| |
seq2  TCCCCATTCCCCATCTAGCATTCAGGGATCCCAAAGGCTGCTAGAGCTTC  850

seq1  AGC-TATCATCACTGACCACCGCATCGAGC-GTGTTC-TTCCAGGC-TTA  885
      ||| ||||||||||||||||||||||| || |||||| ||| |||| |||
seq2  AGCTTATCATCACTGACCACCGCATCGGGCGGTGTTCTTTCTAGGCTTTA  900

seq1  CTCCTGTCTG--TCTGAACAACT-GGGGTGCAGGATGAGGGGCGGCTAGG  932
      ||| ||||||   |||||||||| |||||||||   ||||||||||||||
seq2  CTCTTGTCTGGTCCTGAACAACTGGGGGTGCAGATGGAGGGGCGGCTAGG  950

seq1  TCCTGG-CAGAGTCAGAG-CCA-AGGAGCTCT-CCAGCCTCT  970
      |||||| |||||| | || ||| ||||||||| |||||||||
seq2  TCCTGGTCAGAGTTAAAGTCCATAGGAGCTCTCCCAGCCTCT  992

seq1: chr4_118066243_118067352
seq2: B6Ng01-349G22.g_66_1170 (reverse)

seq1  GGAAGGAGAAAGTGGAGAT-GTGTCAGCTGATGTATGTACAGGGGAGGGG  49
      |||| | |||||||||||| || ||||  ||||||||| || ||||||||
seq2  GGAA-GTGAAAGTGGAGATGGTTTCAGGCGATGTATGTTCATGGGAGGGG  49

seq1  CTACACTGAGATTATTAGGAGAAAGAGAACCAGAGAAGCCAGCCCCAGTT  99
      |||||||||||||||   ||||| |||   |||||||| |||||||||||
seq2  CTACACTGAGATTAT--AGAGAAGGAG-TTCAGAGAAG-CAGCCCCAGTT  95

seq1  AGACCACCAGTCCTCCCAAAGCCAAGGTCATGCCATCTCCAAGGGCCA-T  148
      ||||||||||| |||||||||||||||||||||||||| ||  ||||| |
seq2  AGACCACCAGT-CTCCCAAAGCCAAGGTCATGCCATCTTCA--GGCCATT  142

seq1  CTGCCCTTGTCCCACCCAC-AGGGCCTGGCCTTACCACAGTAGTACTCAG  197
      ||| |||||||||||| || ||||||||||||||||||||||||||||||
seq2  CTG-CCTTGTCCCACCAACAAGGGCCTGGCCTTACCACAGTAGTACTCAG  191

seq1  GGTTCAGGGCTTCCCCACTGCGCAGG-AAGGAGTAGAGCAGGAACGCCCG  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTTCAGGGCTTCCCCACTGCGCAGGAAAGGAGTAGAGCAGGAACGCCCG  241

seq1  GTGGTACACAGTCAGACCCAGGTTGCCTGGCTCGGTCTCAGGACAAGTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACACAGTCAGACCCAGGTTGCCTGGCTCGGTCTCAGGACAAGTGG  291

seq1  ACAGGTAGGAGCCAAACGTTGCCATGGCGATGAACTTCATCAACTCCACG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGGAGCCAAACGTTGCCATGGCGATGAACTTCATCAACTCCACG  341

seq1  TTAGGCACGTGACCAAAGCTACAATCATAGGAGTAAACGCCTCCCACCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCACGTGACCAAAGCTACAATCATAGGAGTAAACGCCTCCCACCTG  391

seq1  GAGAGAGCAAGGGAAGACCCTGTTCCATCAGAGCCAGGAAAGAAGAGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCAAGGGAAGACCCTGTTCCATCAGAGCCAGGAAAGAAGAGCAG  441

seq1  GAGAGGAATCTACTGCTCCCAATTCCCAGACCACGGAGGGAAATGGTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATCTACTGCTCCCAATTCCCAGACCACGGAGGGAAATGGTCAC  491

seq1  AGTGCTCCCAGGATCGACCCCCACCCTGTACCTATCCTTTAGCCTTTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCCAGGATCGACCCCCACCCTGTACCTATCCTTTAGCCTTTCTA  541

seq1  AGATCAATGCCAGCTGGCCACACCACACTCAGCCCTCCTTCATCCAGGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATGCCAGCTGGCCACACCACACTCAGCCCTCCTTCATCCAGGTC  591

seq1  AAAAACACTCTTTAGCCTTCTCTACGGGCTTTGTTAAGGGTTCCACCGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTCTTTAGCCTTCTCTACGGGCTTTGTTAAGGGTTCCACCGGC  641

seq1  TTCTTGTCATTATAGGTCTAACAAAAGGCTTCTTAATCTTTGAGGTGCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCATTATAGGTCTAACAAAAGGCTTCTTAATCTTTGAGGTGCAT  691

seq1  ACAAGCCCTTTGGGATTGTGTTAACACACACGTCTGCTGTGAGGCCTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCTTTGGGATTGTGTTAACACACACGTCTGCTGTGAGGCCTGAG  741

seq1  AGCCTGCATTGACAATAAGCTTTGGTGATACCAACAACAAGGCTATGGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCATTGACAATAAGCTTTGGTGATACCAACAACAAGGCTATGGAC  791

seq1  CCATCTACTTCTAATCTACAGCCCAAATCAGCCCAGACCTATATTTCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACTTCTAATCTACAGCCCAAATCAGCCCAGACCTATATTTCTGT  841

seq1  TAGTGGAGTTTGTGGGACAGCCGCACGTATTCATTTTGTATTTTGTCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGTTTGTGGGACAGCCGCACGTATTCATTTTGTATTTTGTCTGT  891

seq1  GGCTACTGTCACACACTACAGCAAAGTCACACAGCTCTGAAACTCAGGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGTCACACACTACAGCAAAGTCACACAGCTCTGAAACTCAGGGC  941

seq1  CTGGAAAGCCTCCACACTCACTGCCAATCTCTGCAGTGGATGACGGCAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCCTCCACACTCACTGCCAATCTCTGCAGTGGATGACGGCAGA  991

seq1  CCTGTCCATGTGACTCATTTCCTTTCCTGGCCATTCGCTTCCTTATCTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCATGTGACTCATTTCCTTTCCTGGCCATTCGCTTCCTTATCTTC  1041

seq1  ATCCCTTCCCCACGCACCTACAGCTGTCTACACGATGGCCCTTGGCTTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCCCCACGCACCTACAGCTGTCTACACGATGGCCCTTGGCTTCA  1091

seq1  CTTGGAATGAATTC  1110
      ||||||||||||||
seq2  CTTGGAATGAATTC  1105