BAC Information

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BAC

Clone NameB6Ng01-349I11
Chromosome4 (Build37)8 (Build37)
Map Location 50,897,759 - 50,898,82460,573,953 - 60,574,471
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I11.bB6Ng01-349I11.g
ACCGA130496GA130497
length1,0641,055
definitionB6Ng01-349I11.b B6Ng01-349I11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,897,759 - 50,898,824)(60,573,953 - 60,574,471)
sequence
gaattcaattttgttttatgtagaaaaaaatgtactggttttatttattg
ggttgaaagaaatgattgggataatgggaaattctgtgtcctaccatggg
ttctctaaatggagacaccaggaaagaaaaaaatggtgattgagacaatg
cttatgatcaccaaaatgtgaagaagaggtaagcaagaagcagcaccttt
agtctttggtgtgtgcttagtaacagaaacaaacaatacaacagcaacaa
caaaaagaaagtcaggagaaggggggagaaagaacctggagctggaacac
acatcaaaatgttgcctttaataaaactagcagcctcaatcagtcccata
ttacgatcaaagcattccagcacagcacaaaaaacatgagctcctcctag
gcttgtacacaggaagaacacaaactcagagcagtaatgtagtgttgagc
tatggggattgaggacagctctctgtctcttgtaacaggcttcagaggaa
tagctgaggagcacatatgtccctgggtggacctttgtgaagacactctg
tctcttttattctagtgacatttggtcattgattatctaagtcatttaca
gttttacttgacatttgaaattgtgtaaatttgcatgattctaatgagaa
aagttttttttttttatttttgaggcaagttcacgtggtgagaacactgc
tgttgtattaacaaacttaatcctcagtcttcatactgatttattttaaa
aactgcttccttaatatggtaaatcaaaggacaactttcatgatgttagt
tttagtgtagcaaagttagtgtaaaatagaaatttctttacaatttaaat
ggacctgaaaacaataaaaacaactatacctatttgtttgttttctttga
atcttagcatttgtgtgtatatatgtgagtatatatttgttatgtatata
tttttgttattactttgaatttttttcctgaatttatcattaatgttata
tatcacagattagttttatgtgtaaacaggtacaatagaatatatattat
atattattatatat
gaattccagaaagagatgagtccttaagaatatattatcgatgccgggtg
tggtgacatatgcctttaatccaaacacttgggaggcagaggaaggcaga
tttctgtaggccagcctggtctacagagtgagttccaggacagccagggc
tatacagagaaacactgtctcgagaaaaacaaaacaaaactaaactaaaa
cctaaaaacaaaacaaaacaaacagcccttccgctcgactcgagactcga
gccccgggctaccttgccagcagagtcttgcccaacacccgcaagggccc
agacgggactccccacgggaccctaagacctctggtgagtggaacacagc
gcctgccccaatccaatcacgcggaacctgagactgcggtacatagggaa
gcaggctacccgggcctgatcgggggcacaagtcccttccgctcgactcg
agactggagccccgggctaccttgccagcagagtcttgcccaacacccgc
aagggcccacacgggactccccaagggaccctaagacctctggtgagtgg
aacacagcgcctgcgccaatccaatcgcgcggaacttgagactgcggtac
atagggaagcaggctacccgggcttgatctggggcacaaaccccttccac
tccactcgagccccgggctaccttgccagctgagtcgcctgacacccgca
agggcccacacaggattccacacgtgatcctaagacctctagtgagtgga
acacaacttctgccaggagtctggttcgaacaccagatatctgggtacct
gccttgcaagaagagagctttcctgcagagaatactctgcccactgaaac
taggagagtgctaccctccaggtctgctcatagaggctaacagagtcacc
tgaagaacaagctcttaacagtgacaactaaaacagctagcttcagagat
taccagatggcaaaagggcaatgtagaatcctactaacagaatcaggacc
acttcaccatcatcagaacacagcacttcccaccccacctagtcctgggc
acccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50897759_50898824
seq2: B6Ng01-349I11.b_47_1110

seq1  GAATTCAATTTTGTTTTATGTAGAAAAAAATGTACTGGTTTTATTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTGTTTTATGTAGAAAAAAATGTACTGGTTTTATTTATTG  50

seq1  GGTTGAAAGAAATGATTGGGATAATGGGAAATTCTGTGTCCTACCATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAAGAAATGATTGGGATAATGGGAAATTCTGTGTCCTACCATGGG  100

seq1  TTCTCTAAATGGAGACACCAGGAAAGAAAAAAATGGTGATTGAGACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAATGGAGACACCAGGAAAGAAAAAAATGGTGATTGAGACAATG  150

seq1  CTTATGATCACCAAAATGTGAAGAAGAGGTAAGCAAGAAGCAGCACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATCACCAAAATGTGAAGAAGAGGTAAGCAAGAAGCAGCACCTTT  200

seq1  AGTCTTTGGTGTGTGCTTAGTAACAGAAACAAACAATACAACAGCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGTGTGTGCTTAGTAACAGAAACAAACAATACAACAGCAACAA  250

seq1  CAAAAAGAAAGTCAGGAGAAGGGGGGAGAAAGAACCTGGAGCTGGAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAGTCAGGAGAAGGGGGGAGAAAGAACCTGGAGCTGGAACAC  300

seq1  ACATCAAAATGTTGCCTTTAATAAAACTAGCAGCCTCAATCAGTCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAATGTTGCCTTTAATAAAACTAGCAGCCTCAATCAGTCCCATA  350

seq1  TTACGATCAAAGCATTCCAGCACAGCACAAAAAACATGAGCTCCTCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATCAAAGCATTCCAGCACAGCACAAAAAACATGAGCTCCTCCTAG  400

seq1  GCTTGTACACAGGAAGAACACAAACTCAGAGCAGTAATGTAGTGTTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTACACAGGAAGAACACAAACTCAGAGCAGTAATGTAGTGTTGAGC  450

seq1  TATGGGGATTGAGGACAGCTCTCTGTCTCTTGTAACAGGCTTCAGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGATTGAGGACAGCTCTCTGTCTCTTGTAACAGGCTTCAGAGGAA  500

seq1  TAGCTGAGGAGCACATATGTCCCTGGGTGGACCTTTGTGAAGACACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGAGCACATATGTCCCTGGGTGGACCTTTGTGAAGACACTCTG  550

seq1  TCTCTTTTATTCTAGTGACATTTGGTCATTGATTATCTAAGTCATTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTATTCTAGTGACATTTGGTCATTGATTATCTAAGTCATTTACA  600

seq1  GTTTTACTTGACATTTGAAATTGTGTAAATTTGCATGATTCTAATGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTGACATTTGAAATTGTGTAAATTTGCATGATTCTAATGAGAA  650

seq1  AAGTTTTTTTTTTTTATTTTTGAGGCAAGTTCACGTGGTGAGAACACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTTTTTATTTTTGAGGCAAGTTCACGTGGTGAGAACACTGC  700

seq1  TGTTGTATTAACAAACTTAATCCTCAGTCTTCATACTGATTTATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATTAACAAACTTAATCCTCAGTCTTCATACTGATTTATTTTAAA  750

seq1  AACTGCTTCCTTAATATGGTAAATCAAAGGACAACTTTCATGATGTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTCCTTAATATGGTAAATCAAAGGACAACTTTCATGATGTTAGT  800

seq1  TTTAGTGTAGCAAAGTTAGTGTAAAATAGAAATTTCTTTACAATTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTAGCAAAGTTAGTGTAAAATAGAAATTTCTTTACAATTTAAAT  850

seq1  GGACCTGAAAACAAT-AAAACAACTATACCTA-TTGTTTGTTTTCTTTGA  898
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  GGACCTGAAAACAATAAAAACAACTATACCTATTTGTTTGTTTTCTTTGA  900

seq1  ATCTTAGCATTTGTGTGTATATATGTGAGTATATATTTG-TATGTATATA  947
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCTTAGCATTTGTGTGTATATATGTGAGTATATATTTGTTATGTATATA  950

seq1  TTTTTGTTATTTACTTTGAATTTTTTTCTTGAAATTAATCATTAATGTTA  997
      ||||||||| |||||||||||||||||| || |||| |||||||||||| 
seq2  TTTTTGTTA-TTACTTTGAATTTTTTTCCTG-AATTTATCATTAATGTT-  997

seq1  ATATATCACAGATTTAGTTTTATGTGTAAACA-GTACAAATAGAATTATA  1046
      |||||||||||| ||||||||||||||||||| |||| ||||||| ||||
seq2  ATATATCACAGA-TTAGTTTTATGTGTAAACAGGTAC-AATAGAA-TATA  1044

seq1  TATTATATATTTTATTATAT--  1066
      |||||||||  |||||||||  
seq2  TATTATATA--TTATTATATAT  1064

seq1: chr8_60573953_60574471
seq2: B6Ng01-349I11.g_238_681

seq1  AGAAAAACAAAACAAAAC-AAAC---AACTTCAGAAAGATTGATTGATGA  46
      |||||||||||||||||| ||||   ||| | | ||| |          |
seq2  AGAAAAACAAAACAAAACTAAACTAAAACCT-AAAAACA----------A  39

seq1  AAGATAGCTAACAGCTACGGGCTTATTTTACTTCATGCTTCAACCCTCCA  96
      || | | | |||||                                    
seq2  AACAAAACAAACAG------------------------------------  53

seq1  CTGACCTTTAGAAGATGAATGTCGGCACAAGTCCCTTCCGCTCGACTCGA  146
                                      ||||||||||||||||||
seq2  --------------------------------CCCTTCCGCTCGACTCGA  71

seq1  GACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCA  121

seq1  AGGGTCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGAGTGGA  246
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAGACGGGACTCCCCACGGGACCCTAAGACCTCTGGTGAGTGGA  171

seq1  CCACAGTGCCTGCCCCAATCCAATCGCGCGGAACTTGAGACTGCGGTACA  296
       ||||| |||||||||||||||||| |||||||| |||||||||||||||
seq2  ACACAGCGCCTGCCCCAATCCAATCACGCGGAACCTGAGACTGCGGTACA  221

seq1  TAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGCT  346
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGGGAAGCAGGCTACCCGGGCCTGATCGGGGGCACAAGTCCCTTCCGCT  271

seq1  CGACTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCTCAA  396
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CGACTCGAGACTGGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAA  321

seq1  CAACCGCAAGGGTCCACACAGGACTCCCCACGGGACCCTAAGACCTCTGG  446
      || ||||||||| |||||| |||||||||| |||||||||||||||||||
seq2  CACCCGCAAGGGCCCACACGGGACTCCCCAAGGGACCCTAAGACCTCTGG  371

seq1  TGAGTGGACCACAGTGCCTGCCCCAATCCAATCGCGCGGAACTTGAGACT  496
      |||||||| ||||| |||||| ||||||||||||||||||||||||||||
seq2  TGAGTGGAACACAGCGCCTGCGCCAATCCAATCGCGCGGAACTTGAGACT  421

seq1  GCGGTACATAGGGAAGCAGGCTA  519
      |||||||||||||||||||||||
seq2  GCGGTACATAGGGAAGCAGGCTA  444