BAC Information

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BAC

Clone NameB6Ng01-350G23
Chromosome4 (Build37)
Map Location 144,055,052 - 144,056,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3
Downstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350G23.bB6Ng01-350G23.g
ACCGA131104GA131105
length1,1351,189
definitionB6Ng01-350G23.b B6Ng01-350G23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatgtgtctgtgagtgtaatgtgactagttgtttgaagttcct
gctttgatttccccacagtgatgaactgtaacctggaattatgagctgaa
ccaaacctctttctcccctaggctgtttttcatcagggtattttattaca
tctcctgaaatgaaacaagaacattcctcaactggtaatggagcagaagc
tttcaaataaagggatttttatctctcaagaaacattgagccaatgcgta
gagaattacaggtgataggtgatctgggtgctagcatctcataggcagat
gccaaagagcttgctaagcatctctacacatatgttggctcttgcaacac
aaacgtatctggtctagcatgtcaacagctgaggttatgaaacttggatc
agggccatttgaatttgaatgttgggtctgctcaatgccagcattctaat
aatgagaaagttactggcagtttctaaatctttcttcatggggtggttta
gtgtaccaaatacatcagcaaatgcaaaatatgagtgtgccaagctacac
attcaacagatggagatagaaacagtggcaaacacatttcttcatcctcc
tcatggacacactgggaagcaatgctctggcccctgctacaagggcatgg
gaacttggaatgcatcctggccagttgggtgtgagtagggatgctagaga
ccatgcctaaccatggaaaatttgcatagtcctccactgcctggctttat
agcgtccagaggcccttatgctctttctcttgggaaaggaagggatcctg
agggtgattcttaccaggtcacatccctgtaccaatcttggaggggagtg
gcatgaggtgggctgggaagtgaaggacattgccagaggcattttatatt
agatattgtgggaaaatacatgaagctgcagagatgcaaggttacttgtt
ctggtagccacttttgtggtggctattttggcatgggtaggcttcagtga
tactagattctaaatcagtttacaggtagctacttctttgcacatttctt
tctgattttatccttgtgtctaactttgcaacccgtgatcaagctttcac
acaactgcctgatttgaccagctgattagtacata
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatatcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgcgactctc
tcgcccgtcccagaaacagctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagaccccgtgctctcaccaggaa
ggtggccggctgtctggagctaaagatggcgccgcccagaagctctgcga
ctctctcgcccgtcccagaaacagctggcactctgtattccacacggtca
cccgtgcagcctgccctccgcggagtcccggagccaagaaggctcctgcc
cggcgcctgtgccacaaacctctcgggccaggcagaccccgtgctctcac
caggaagtggccggctgtctggagctaaagaatggcgccgcccagaagct
ctgcgactctctcgcccgtcccagaacagctggcactctgtattcacacg
tcacctgtgcagcctgccctcgcggagtcctgagctagagctcccgtcgg
cgccttgtgccacaatctctcagccaggcagactcctcgtgcttctacca
gaaaggtgacagctgttctggagctgatatgcgtcgctcagaggctctgt
gcactctctcgccccggtcccagaatacacagacctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144055052_144056187
seq2: B6Ng01-350G23.b_45_1179

seq1  GAATTCCTATGTGTCTGTGAGTGTAATGTGACTAGTTGTTTGAAGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTGTCTGTGAGTGTAATGTGACTAGTTGTTTGAAGTTCCT  50

seq1  GCTTTGATTTCCCCACAGTGATGAACTGTAACCTGGAATTATGAGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATTTCCCCACAGTGATGAACTGTAACCTGGAATTATGAGCTGAA  100

seq1  CCAAACCTCTTTCTCCCCTAGGCTGTTTTTCATCAGGGTATTTTATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTCTTTCTCCCCTAGGCTGTTTTTCATCAGGGTATTTTATTACA  150

seq1  TCTCCTGAAATGAAACAAGAACATTCCTCAACTGGTAATGGAGCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAAATGAAACAAGAACATTCCTCAACTGGTAATGGAGCAGAAGC  200

seq1  TTTCAAATAAAGGGATTTTTATCTCTCAAGAAACATTGAGCCAATGCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATAAAGGGATTTTTATCTCTCAAGAAACATTGAGCCAATGCGTA  250

seq1  GAGAATTACAGGTGATAGGTGATCTGGGTGCTAGCATCTCATAGGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTACAGGTGATAGGTGATCTGGGTGCTAGCATCTCATAGGCAGAT  300

seq1  GCCAAAGAGCTTGCTAAGCATCTCTACACATATGTTGGCTCTTGCAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAGCTTGCTAAGCATCTCTACACATATGTTGGCTCTTGCAACAC  350

seq1  AAACGTATCTGGTCTAGCATGTCAACAGCTGAGGTTATGAAACTTGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATCTGGTCTAGCATGTCAACAGCTGAGGTTATGAAACTTGGATC  400

seq1  AGGGCCATTTGAATTTGAATGTTGGGTCTGCTCAATGCCAGCATTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATTTGAATTTGAATGTTGGGTCTGCTCAATGCCAGCATTCTAAT  450

seq1  AATGAGAAAGTTACTGGCAGTTTCTAAATCTTTCTTCATGGGGTGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAGTTACTGGCAGTTTCTAAATCTTTCTTCATGGGGTGGTTTA  500

seq1  GTGTACCAAATACATCAGCAAATGCAAAATATGAGTGTGCCAAGCTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCAAATACATCAGCAAATGCAAAATATGAGTGTGCCAAGCTACAC  550

seq1  ATTCAACAGATGGAGATAGAAACAGTGGCAAACACATTTCTTCATCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAGATGGAGATAGAAACAGTGGCAAACACATTTCTTCATCCTCC  600

seq1  TCATGGACACACTGGGAAGCAATGCTCTGGCCCCTGCTACAAGGGCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGACACACTGGGAAGCAATGCTCTGGCCCCTGCTACAAGGGCATGG  650

seq1  GAACTTGGAATGCATCCTGGCCAGTTGGGTGTGAGTAGGGATGCTAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGAATGCATCCTGGCCAGTTGGGTGTGAGTAGGGATGCTAGAGA  700

seq1  CCATGCCTAACCATGGAAAATTTGCATAGTCCTCCACTGCCTGGCTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTAACCATGGAAAATTTGCATAGTCCTCCACTGCCTGGCTTTAT  750

seq1  AGCGTCCAGAGGCCCTTATGCTCTTTCTCTTGGGAAAGGAAGGGATCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCCAGAGGCCCTTATGCTCTTTCTCTTGGGAAAGGAAGGGATCCTG  800

seq1  AGGGTGATTCTTACCAGGTCACATCCCTGTACCAATCTTGGAGGGGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATTCTTACCAGGTCACATCCCTGTACCAATCTTGGAGGGGAGTG  850

seq1  GCATGAGGTGGGCTGGGAAGTGAAGGACATTGCCAGAGGCA-TTTATATA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GCATGAGGTGGGCTGGGAAGTGAAGGACATTGCCAGAGGCATTTTATATT  900

seq1  AGATATTGTGGGGAAAATACATGAAGCTGCAGAGATGCAAGGTTACTTGT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGT-GGGAAAATACATGAAGCTGCAGAGATGCAAGGTTACTTGT  949

seq1  TCTGGTAGCCACCTTTTGTGGTGGCTATTTTGGCAATGGTAGGCTTCAGT  999
      ||||||||||| |||||||||||||||||||||||  |||||||||||||
seq2  TCTGGTAGCCA-CTTTTGTGGTGGCTATTTTGGCATGGGTAGGCTTCAGT  998

seq1  GATACTAGATTCTAAATCCAGTTTAACAGTAAGCTACT--CTTGCACATT  1047
      ||||||||||||||||| |||||| ||||  |||||||   |||||||||
seq2  GATACTAGATTCTAAAT-CAGTTT-ACAGGTAGCTACTTCTTTGCACATT  1046

seq1  TCTTTCTGATTTTATCCCTTGTGTCT-ACTTTGC-ACCCGTGGTTCAAGC  1095
      ||||||||||||||| |||||||||| ||||||| |||||| | ||||||
seq2  TCTTTCTGATTTTAT-CCTTGTGTCTAACTTTGCAACCCGT-GATCAAGC  1094

seq1  TTCCACACAAACTGCTGGTTTTGA-CAGTTGATTAGTACATA  1136
      || ||||| ||||||  | ||||| ||| |||||||||||||
seq2  TTTCACAC-AACTGCCTGATTTGACCAGCTGATTAGTACATA  1135