BAC Information

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BAC

Clone NameB6Ng01-350L11
Chromosome4 (Build37)
Map Location 66,185,147 - 66,186,307
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, Trim32
Downstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L11.bB6Ng01-350L11.g
ACCGA131308GA131309
length1,2081,116
definitionB6Ng01-350L11.b B6Ng01-350L11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctaaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaaatcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggattcagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacataatg
gagtaatactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctaagtgaggttacacattcacaaa
ggaactcacacaatatgtactcagtgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaattaagactgaagtttggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacagtagcaagattttatcgaaa
ggacccagatgtagctgtctcttgcgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccta
taggtggatcatcattatgaactaccagtacccccggagctcttgactct
agctgcatatgtatcaaagatggctagttcggtcatcactaaagagagcc
caatgacaccgcaacttatatgcccagaacagggacgcacgtcaagggga
atggtgttacggtaatgggggtggtctgattctagtcagatcagctactt
catgacac
gaattctttccaagaagagtgagaagtctcaaagactgagattaagtgta
aaatagagattgggggtgggtatcaaaaatggtctgtgggaaagagacac
catggcttgatgagggcaaacctcaaagtggcgccacatagcagattgtt
tttttcttcttgtttcctttgggctcatggagagtgagagtcatttgtag
ttttttgtctgtaagaaggaattcaaattttgctctttttaaaaaggcac
ctgatttacagggggtgtgaaacaaagcagaaaatgctaaaaggaggggg
aataacagttcacatgagaagaaaaatgaatacagaaaaaaaaatccttt
taacagtttctctcatctaaagtggttaggacagcgttttttacattaac
ttcagcattctctcagaaggggataaaaatgccctgtgatcctcagctaa
gaattgctggtgattttatatcctcttgctggcatagatcgtaatcaacc
ggaaaaacctcaaaatgacaaacaaacaaaagacagctttgttctctgag
gttcattagctccggacaaggctgagaagcatcagaaaatgaggtgctag
aagcaggcaatgtacagaggtcacgttggggtaattcaactctccccact
gtaccatcctgtccctctctttggttgccagaggcctggttgctccaaag
aattgagagaaactgaggctgaggggtacagctcaagggtggttagaaag
aagaggctcctgggctagttcacgctgagcccaaagttactcacctctgc
tttcaaggacattacagagtagcaagcttcatttcttcttccagcccaat
ccctctttgttgcatcctcattaagtccaaatggcatcttattcatggac
acatacgattagaaacctcaagaagcggtctcttttctctttctcacata
ttgatcatctctctcccacactccctgcttcctctctcctcctcctctct
tgccaccccactctcaataattcacccttattcctacctatgactactta
atagatccgtcagcacactataatggctaataatactgatgagtttgctg
atctacagttcaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66185147_66186307
seq2: B6Ng01-350L11.g_67_1182

seq1  GAATTCTTTCCAAGAAGAGTGAGAAGTCTCAAAGACTGAGATTAAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAAGAAGAGTGAGAAGTCTCAAAGACTGAGATTAAGTGTA  50

seq1  AAATAGAGATTGGGGGTGGGTATCAAAAATGGTCTGTGGGAAAGAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGATTGGGGGTGGGTATCAAAAATGGTCTGTGGGAAAGAGACAC  100

seq1  CATGGCTTGATGAGGGCAAACCTCAAAGTGGCGCCACATAGCAGATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTGATGAGGGCAAACCTCAAAGTGGCGCCACATAGCAGATTGTT  150

seq1  TTTTTCTTCTTGTTTCCTTTGGGCTCATGGAGAGTGAGAGTCATTTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCTTGTTTCCTTTGGGCTCATGGAGAGTGAGAGTCATTTGTAG  200

seq1  TTTTTTGTCTGTAAGAAGGAATTCAAATTTTGCTCTTTTTAAAAAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCTGTAAGAAGGAATTCAAATTTTGCTCTTTTTAAAAAGGCAC  250

seq1  CTGATTTACAGGGGGTGTGAAACAAAGCAGAAAATGCTAAAAGGAGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTACAGGGGGTGTGAAACAAAGCAGAAAATGCTAAAAGGAGGGGG  300

seq1  AATAACAGTTCACATGAGAAGAAAAATGAATACAGAAAAAAAAATCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTTCACATGAGAAGAAAAATGAATACAGAAAAAAAAATCCTTT  350

seq1  TAACAGTTTCTCTCATCTAAAGTGGTTAGGACAGCGTTTTTTACATTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTCTCTCATCTAAAGTGGTTAGGACAGCGTTTTTTACATTAAC  400

seq1  TTCAGCATTCTCTCAGAAGGGGATAAAAATGCCCTGTGATCCTCAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATTCTCTCAGAAGGGGATAAAAATGCCCTGTGATCCTCAGCTAA  450

seq1  GAATTGCTGGTGATTTTATATCCTCTTGCTGGCATAGATCGTAATCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTGGTGATTTTATATCCTCTTGCTGGCATAGATCGTAATCAACC  500

seq1  GGAAAAACCTCAAAATGACAAACAAACAAAAGACAGCTTTGTTCTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACCTCAAAATGACAAACAAACAAAAGACAGCTTTGTTCTCTGAG  550

seq1  GTTCATTAGCTCCGGACAAGGCTGAGAAGCATCAGAAAATGAGGTGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGCTCCGGACAAGGCTGAGAAGCATCAGAAAATGAGGTGCTAG  600

seq1  AAGCAGGCAATGTACAGAGGTCACGTTGGGGTAATTCAACTCTCCCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAATGTACAGAGGTCACGTTGGGGTAATTCAACTCTCCCCACT  650

seq1  GTACCATCCTGTCCCTCTCTTTGGTTGCCAGAGGCCTGGTTGCTCCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCCTGTCCCTCTCTTTGGTTGCCAGAGGCCTGGTTGCTCCAAAG  700

seq1  AATTGAGAGAAACTGAGGCTGAGGGGTACAGCTCAAGGGTGGTTAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAGAAACTGAGGCTGAGGGGTACAGCTCAAGGGTGGTTAGAAAG  750

seq1  AAGAGGCTCCTGGGCTAGTTCACGCTGAGCCCAAAGTTACTCACCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTCCTGGGCTAGTTCACGCTGAGCCCAAAGTTACTCACCTCTGC  800

seq1  TTTCAAGGACATTACAGAGTAGCAAGCTTCATTTCTTCTTCCAGCCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGACATTACAGAGTAGCAAGCTTCATTTCTTCTTCCAGCCCAAT  850

seq1  CCCTCTTTGTTGCATCCTCATTAAGTCCAAATGGCATCTTATTCATGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGTTGCATCCTCATTAAGTCCAAATGGCATCTTATTCATGGAC  900

seq1  ACATACGATTAGAAACCTCAAGGAAGCGGGTTCCTCTTTTCTCTTTCTCA  950
      ||||||||||||||||||||| |||||||    |||||||||||||||||
seq2  ACATACGATTAGAAACCTCAA-GAAGCGG---TCTCTTTTCTCTTTCTCA  946

seq1  CCATTATTGAATTCAATCTCTCCTTCCCACCACTCCCCTGCCTTCTTCCT  1000
      |   ||||||  || |||||||  ||||| |||||     ||| ||||| 
seq2  C--ATATTGA--TC-ATCTCTC--TCCCA-CACTC-----CCTGCTTCC-  982

seq1  TCTCCCTTCTTCTTCCTCTGCCCCACCCCCACTCTTCACATTATTTCACC  1050
      ||||   || || ||||||    |  |||||||||   || || ||||||
seq2  TCTC---TCCTCCTCCTCTCTTGCCACCCCACTCT---CAATAATTCACC  1026

seq1  CTTATTTTCTTACCTATGACTACTTAAATAGAATCCCGTCAGCACACTAT  1100
      ||||  ||| ||||||||||||||| ||||||   |||||||||||||||
seq2  CTTA--TTCCTACCTATGACTACTT-AATAGA--TCCGTCAGCACACTAT  1071

seq1  TATTGTTATATTATATTACATGTATGTGAGTGTTTTGCTTGTATCTACAC  1150
       || | ||    ||| ||| ||    ||||   ||||||   ||||||| 
seq2  AATGGCTA----ATAATAC-TG---ATGAG---TTTGCT--GATCTACA-  1107

seq1  ATGTTCACCAC  1161
        |||||||||
seq2  --GTTCACCAC  1116