BAC Information

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BAC

Clone NameB6Ng01-350M07
Chromosome4 (Build37)
Map Location 145,213,971 - 145,215,055
singlet/doubletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350M07.bB6Ng01-350M07.g
ACCGA131348GA131349
length1,185286
definitionB6Ng01-350M07.b B6Ng01-350M07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaaaaatctcatcttagcgttcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttacccacaaatccc
atcttaatagtcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttacccgaaaattccatcttagtattcatca
gagaattcatacaggagagaaaccttataaatgcagtgaatgtgacaaat
gctttactgaaaaaagcagtctgagaattcatcagagaattcatacagga
gagaatccttacaaatgcagtgaatgtgacaaatgctttacccgaaaatt
ccatcttagtattcatcagaaaatccatacaggagagaaaccttacaaat
agtttacatgtgacaaatacaatactcaccatgtcagtctgagaaatcat
cagttacttcatacagtagagaatctttataaatgaagtgaacgagacaa
tcctttaccaaaatatatcatcttataattcattagagaatacttagaga
agacaaacttcaaatatattgtaggtatgaatcctttacttttggcctat
ttcctagaatataacagtgaatatacttacaggctagaaacttaactcat
gcattgtatgaagaaatatctttgacttcatttcaggtcagaaaaaacat
ctaagaactttttaagggatagtatttctgttgggaaaaatgtggcatat
gttttattcaaggtatattcttgacaacacttgaggctccactctagaga
attggtatgattatgaaaatcttgtgaaaattttcatgcaatgttcaaat
cttgggtaatgtcaactatttatgctggatgaactctgtacatgtgaaaa
tgtagaaagccctttcatgacaacttttacttgttcaccctcaaatgtta
caacatgaagaaaaagtgggggaagtcagagatagtatgcatacacactg
agaaagaaatatcattcaagaaaacttatacgtctttatacatctcacat
atctaataaacctggtacattctgtatattactccttgactaatcgaaat
taccttaaagagaatctgcaactgagccacccaga
tattcagctactaataccaagacatcaccaattttgcaggtaaatggatg
taacttgagaatatcatcctcagtgaggtaacttagtccaaaaacaacat
ggatgacatgtactcacttaaaagtggatattagccaaaaaatacaggta
agatgttacattccatagaaccaaagaaactaaacaagaaggaaggacca
agggaagaagtttgaatctcacttagaaggaggaataaaatagtcatatg
aggaagatggaggaagggagctgggatggagagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145213971_145215055
seq2: B6Ng01-350M07.b_170_1229

seq1  GACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCA  50
      ||||||||||||||||  |||| |||||||| || |||||||||||||||
seq2  GACAAATGCTTTACCCACAAATCCCATCTTAATAGTCATCAGAGAATTCA  50

seq1  TACAGGAGAGAACCCTTACAAATGCAGTGAATGTGACAAATGCTTTACCC  100
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  TACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCC  100

seq1  AAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAACCT  150
       ||||| | |||||| ||||||||||||||||||||||||||||||||||
seq2  GAAAATTCCATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCT  150

seq1  TATAAATGCAGTGAATGTGACAAATGCTTTAATGAAAAAGGCAGCCTGAG  200
      ||||||||||||||||||||||||||||||| ||||||| |||| |||||
seq2  TATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAAGCAGTCTGAG  200

seq1  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250

seq1  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300

seq1  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAC  350

seq1  TCATCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400

seq1  TTTATAAATGAAGTGAACGAGACAATCCTTTACCAAAATATATCATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATGAAGTGAACGAGACAATCCTTTACCAAAATATATCATCTTA  450

seq1  TAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTA  500
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TAATTCATTAGAGAATACTTAGAGAAGACAAAC--TTCAAATATATTGTA  498

seq1  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGAATATAACAGTGAATA  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTATGAATCCTTTACTTTTGGCCTATTTCCTAGAATATAACAGTGAATA  548

seq1  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  598

seq1  GACTTCATTTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATACT  650
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GACTTCATTTCAGGTCAGAAAAAACATCTAAGAACTTTTTAAGGGATAGT  648

seq1  ATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCACGGTGTATTCTTG  700
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCAAGGTATATTCTTG  698

seq1  ACAACACTTGAGGCTCCACTCTAGAGAATTAGTATGATTATGAAAATCTT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAACACTTGAGGCTCCACTCTAGAGAATTGGTATGATTATGAAAATCTT  748

seq1  GTGAAAATTTTCATGCAATGTTCAAATCTTGAGTAATGTCAACTATTTAT  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGAAAATTTTCATGCAATGTTCAAATCTTGGGTAATGTCAACTATTTAT  798

seq1  GCTGGAGGACCTCTGTACATGTGAAAATGTAGAAAG-CCTTTCATGACAC  849
      |||||| || |||||||||||||||||||||||||| |||||||||||| 
seq2  GCTGGATGAACTCTGTACATGTGAAAATGTAGAAAGCCCTTTCATGACAA  848

seq1  CTTTTACTTGTTCACCCTCAAATGTTACAACATGAAG-AAAAGT-GGGGA  897
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  CTTTTACTTGTTCACCCTCAAATGTTACAACATGAAGAAAAAGTGGGGGA  898

seq1  AGTCAGAAGATAGTATTGCATAACACACTGAGAAAGAAATAATCCATTTC  947
      |||||| |||||||| ||||| |||||||||||||||||||   ||||  
seq2  AGTCAG-AGATAGTA-TGCAT-ACACACTGAGAAAGAAATA--TCATT--  941

seq1  AAAGAAAACTTATTAAGGTCTTTAATACAATCCTCACAATATCTAATAAA  997
       ||||||||||||  | |||||| |||||   ||||| ||||||||||||
seq2  CAAGAAAACTTAT--ACGTCTTT-ATACA--TCTCAC-ATATCTAATAAA  985

seq1  ACTGGTAACATTCTGTATATTTAATTCACATGAACTAATTCAGAAAAATT  1047
       ||||| ||||||||||||||  | || | || ||||||   ||||    
seq2  CCTGGT-ACATTCTGTATATT--ACTC-CTTG-ACTAAT--CGAAA----  1024

seq1  ATACTTAAAAGAGTATCTGGCAAACTGAGCCACCCAGA  1085
       ||| | |||||| |||||   ||||||||||||||||
seq2  TTACCTTAAAGAGAATCTG--CAACTGAGCCACCCAGA  1060