Query= MSMg01no045_l14.b1 MSMg01no045_l14.b1 CHROMAT_FILE:
MSMg01no045_l14.b1 PHD_FILE: MSMg01no045_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:45 2005
(378 letters)
>mm_chr4_130945804_130946582
Length = 779
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 7 gaattcttgatccttcttca-cctccacatgctgggattacaggcattatgcacccatag 65
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgatccttcttcaacctccacatgctgggattacaggcattatgcacccatag 266
Query: 66 tggctggctgatcacctttctataattccagatccaagagatccacacacttttagcatg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggctggctgatcacctttctataattccagatccaagagatccacacacttttagcatg 326
Query: 126 cattcacacagacgcgtacacataaataaaaatgaagtgaactttttaaaacaaagtaac 185
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 327 cattcacacagacgcatacacataaataaaaatgaaatgaactttttaaaataaagtaac 386
Query: 186 tggataatgactcccacaaagaaatacaaatggatactaaacttttattttttagtattc 245
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 tggataatgactcccaaaaagaaatacaaatggatactaagcttttattttttagtattc 446
Query: 246 aactttgttagccattaaggagatgcaaataaaaacccgagcatccatcttagcccagca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aactttgttagccattaaggagatgcaaataaaaacccgagcatccatcttagcccagca 506
Query: 306 agatggctaccagtaagaaaacaaatgtcaacaagttctggtgaggatgtggggaaaggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agatggctaccagtaagaaaacaaatgtcaacaagttctggtgaggatgtggggaaaggg 566
Query: 366 gaacacttgtcca 378
|||||||||||||
Sbjct: 567 gaacacttgtcca 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 779
Length adjustment: 9
Effective length of query: 369
Effective length of database: 770
Effective search space: 284130
Effective search space used: 284130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_l14.g1 MSMg01no045_l14.g1 CHROMAT_FILE:
MSMg01no045_l14.g1 PHD_FILE: MSMg01no045_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:45 2005
(497 letters)
>mm_chr4_131098168_131099064
Length = 897
Score = 774 bits (400), Expect = 0.0
Identities = 430/440 (97%)
Strand = Plus / Minus
Query: 58 tcaacctgtgagtcgtgactgctttggaggcttggatgattctcgtacaggggtcgccta 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tcaacctgtgagtcgtgactgctttggaggcttggatgattctcgtacaggggtcgccta 838
Query: 118 tcggatatttacattacgattcataacagcagcaaaattacagttctgaagtacaacaaa 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tcagatatttacattacgattcataacagcagcaaaattacagttctgaagtacaacaaa 778
Query: 178 ataattttatagtttggagttgccacagcacgaggaactgtattaaagggttgcagcatt 237
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 777 acaattttatagtttggagttgccacagcacgaggaactgtattaaagggctgcagcatt 718
Query: 238 tggaaggttgaaacacactggcataaagtgttttcagagggtgtgggttacagagatttc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tggaaggttgaaacacactggcataaagtgttttcagagggtgtgggttacagagatttc 658
Query: 298 ttaccatgtaacgatcctcctgtgtgcttccaagtatagcgccgaatttaaaaattcagt 357
||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct: 657 ttaccatgtaatgatcctcctgtatgcttccaagtatagtgttgaatttaaaaattcagt 598
Query: 358 atgttgtgtttcagcttataccccaaattctggatgaggtaggaaaaaaaggtttggatg 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 597 atgttgtgtttcagcttataccccaatttctggatgaggtaggaaaaaaaggtttggatg 538
Query: 418 aggaggggagagctcagggttctagtcccgacctcctcttcctagaagccttccttgatt 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 537 aggaggggagagctcagggttctagtctcgacctcctcttcctagaagccttccttgatt 478
Query: 478 gccttctcctgcctgtccta 497
||||||||||||||||||||
Sbjct: 477 gccttctcctgcctgtccta 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
