Query= MSMg01no046_a09.b1 MSMg01no046_a09.b1 CHROMAT_FILE:
MSMg01no046_a09.b1 PHD_FILE: MSMg01no046_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:07 2005
(633 letters)
>mm_chr4_86257894_86258923
Length = 1030
Score = 493 bits (255), Expect = e-143
Identities = 306/333 (91%), Gaps = 18/333 (5%)
Strand = Plus / Minus
Query: 301 cagcagagagacagactttgctgtagttgttattcgagatagggtttctctgtatagctc 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 1030 cagcagagagacagactttgttgtagttgttattcgagatagggtttctctgaatagctc 971
Query: 361 tggctgtcctggaactcactctgtagaccaagctggcctggaactcagaaatccacctgt 420
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 970 tggctgtcctggaactcactctgtagaccaggctggcctgcaactcagaaatccgcctgt 911
Query: 421 ctcctcctccccagtgctgcccggtgagagacagatttctagtacagcaagttgaagtct 480
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 910 cttctcctcccaagtgctgcccggtgagagacagatttctagtacagcaagttgaagtat 851
Query: 481 ggctggtggtgcctcccaccaattccagcaactggaagatggagagcattccagaattag 540
||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 850 ggctggtggtgcctcccac-aa--------------agatggagagcattccagaattag 806
Query: 541 gaattcagggtcatcttcctttgggaagggagttcaaggccagaggaggctaaaagaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattcagggtcatcttcctttgggaagggagttcaaggccagaggaggctaaaagaaat 746
Query: 601 cttctcgactcgcaacctccacgaccaaagaaa 633
|| ||||| ||||||||||||||||||||||
Sbjct: 745 ct---cgacttgcaacctccacgaccaaagaaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1030
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1020
Effective search space: 635460
Effective search space used: 635460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_a09.g1 MSMg01no046_a09.g1 CHROMAT_FILE:
MSMg01no046_a09.g1 PHD_FILE: MSMg01no046_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:07 2005
(591 letters)
>mm_chr4_86238452_86239442
Length = 991
Score = 1127 bits (583), Expect = 0.0
Identities = 589/591 (99%)
Strand = Plus / Plus
Query: 1 tttttaaaaattgaagacaggcgatattagaggagacacaagaaaacaaactcttgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttaaaaattgaagacaggcgatattagaggagacacaagaaaacaaactcttgaact 260
Query: 61 ctgaaaataatgagcttctagaatacacataatacaaacagttaaaaacaaatcacattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaaataatgagcttctagaatacacataatacaaacagttaaaaacaaatcacattt 320
Query: 121 aggagtgccccaataaacctgcataatataaaaaagaaatcttaccagcaaccataaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtgccccaataaacctgcataatataaaaaagaaatcttaccagcaaccataaatt 380
Query: 181 ataacctaattatgtacaaatgaatgacacaatgagatgtgtctctgataatagaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataacctaattatgtacaaatgaatgacacaatgagatgtgtctctgataatagaaggca 440
Query: 241 agaacccagacttaaccatcaaagtcctaaaagatctgtcaacccaagcaaactactgtt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agaacccagacttaaccatcaaagtcctaaaagatctatcaacccaagcaaactactgtt 500
Query: 301 caatactaagtgaatgccaggtttggcggctcacatctttaatcccagccctcagatagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatactaagtgaatgccaggtttggcggctcacatctttaatcccagccctcagatagg 560
Query: 361 ctgaagcattcattttttacaagtgatagattctatcatttcttcataacattttatgat 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ctgaagcattcattttttacaagtgatagattctatcctttcttcataacattttatgat 620
Query: 421 caaaaacagtaattttatggtatatatatttcacaataaaaataactagaaagcaggtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaaacagtaattttatggtatatatatttcacaataaaaataactagaaagcaggtaa 680
Query: 481 aggcacttgccaccttgcctgattatctgtgtttgatcctagggtaccacttggtaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcacttgccaccttgcctgattatctgtgtttgatcctagggtaccacttggtaaaaa 740
Query: 541 aaggtgagaaccaggttgtcctgtgacctctacacgtggaccatacatagt 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggtgagaaccaggttgtcctgtgacctctacacgtggaccatacatagt 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
