BAC Information

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BAC

Clone NameMSMg01-046E13
Chromosome4 (Build37)
Map Location 36,251,574 - 36,290,112
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046E13.T7 (MSMg01no046_e13.b1)MSMg01-046E13.TJ (MSMg01no046_e13.g1)
ACCAG276699AG276700
length693698
length of high quality
(start - end)		640 (44 - 683)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no046_e13.b1 PHD_FILE: MSMg01no046_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:25 2005CHROMAT_FILE: MSMg01no046_e13.g1 PHD_FILE: MSMg01no046_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,251,574 - 36,252,210)(36,289,645 - 36,290,112)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAATTCAAGGCATTATCTCGTATATAGAGTATAGAAGTGCATTTC
AGCAGGAATCATGGCTGCCAATATTAGATAGGAATAAATTGTGGCTTTTG
CCATTGAACCACCTCCTCCCCCCAGCTCTACTCAGGGGAGGGCTGCAGTG
AAGAAGACTGTGGTCAGCTGTAGCTTAAATAAAATTTGGATGATTAAAAT
CACTATAGACCCAGGTGATCTTTCAGTGGTCTTAAACTCTATATCATTGG
CCTCTCTTATGTTCCTCTTGGCAAAATAGTACTTTTGATTTTCTGTCTAG
CATCCTTTTATATTTGTTCCTTTTTTGTTTGTATTACTTGGCAGACGGAG
ATGAGGACATAAATGTGACATTGAACAACTACTGGAGCCCATGTTCTCAA
ATTTTGGTTGAGTCACAGGTGTTGCCTAGATCTGGTGCCAAGGTTTGAGG
CTGTCTGATAACTGTGCACACACCCTTTTATCTCTAGATATTGCCCATGA
AGAGGCTGTATAATAAGAAGAGAGTTTACAATANAGGTTAGCCTAGAATA
ATAGTTTTCTAAATGAGAGGTAATATTTCCTTTAGTATTTCCAGTAACTA
GAAGAGAATTTGATTAGGGAACTTTCTTGTAATATTTAATTAA

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTTGCATAGTGAAGAAATTTCTGTTT
AGTGGAAGAAAAAAGAGCAAAGCTGAAAGAAACTCCATTTATGCTTATAC
AACCTAGAGTTTCTTCTACTTTGCCTCAGCTTATTAAATAATTGCATTCA
TCCCACAATTCTTTAGGTGACATATTTGAAATTTATAACTGATGCCAACT
TAGATTTATCTAAAGTTTTCAGCCTTTTTTGTATCATTATTCATTATCTT
AAAACTGAATCAATTCAGTTGTTTCTTATGAGTAGAAAAATAGGTTATGT
AAGTATTTTGCTATCAAAGTTACAAACTTGTCTTAGTTTGCTTTCAGTTG
CAAAACTAAAAAACAAAAGACAAAAAACAAAAGCACATCAAACCAACCAA
CCAAACATCAACAAAACCCACAATGACTTAATCCAACAGAAGGGAAGAAA
ATGCTTATACCATGATATGCCTCCAAGTTGCAATTCATCGTTGAAAATGT
CAGGACAGGTATCCAAGGTAGTGAATACCTGAGACCTTAGAGAATAGGAA
AAATAAGATTATAGATAATTACTCTATTGGAATATTGTCAAATATTTTCA
TTATTTAGATTANNAGTGATATCTTTATCAAGTAATATTACATTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_e13.b1 MSMg01no046_e13.b1 CHROMAT_FILE:
MSMg01no046_e13.b1 PHD_FILE: MSMg01no046_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:25 2005
         (640 letters)



>mm_chr4_36251371_36252410
          Length = 1040

 Score = 1187 bits (614), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaaattcaaggcattatctcgtatatagagtatagaagtgcatttcagcagg 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaaattcaaggcattatctcatatatagagtatagaagtgcatttcagcagg 263

                                                                       
Query: 64  aatcatggctgccaatattagataggaataaattgtggcttttgccattgaaccacctcc 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 aatcatggctgccaatattagataggaataaattgtgccttttgccattgaaccacctcc 323

                                                                       
Query: 124 tccccccagctctactcaggggagggctgcagtgaagaagactgtggtcagctgtagctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccccccagctctactcaggggagggctgcagtgaagaagactgtggtcagctgtagctt 383

                                                                       
Query: 184 aaataaaatttggatgattaaaatcactatagacccaggtgatctttcagtggtcttaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaataaaatttggatgattaaaatcactatagacccaggtgatctttcagtggtcttaaa 443

                                                                       
Query: 244 ctctatatcattggcctctcttatgttcctcttggcaaaatagtacttttgattttctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctctatatcattggcctctcttatgttcctcttggcaaaatagtacttttgattttctgt 503

                                                                       
Query: 304 ctagcatccttttatatttgttccttttttgtttgtattacttggcagacggagatgagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 ctagcatccttttatatttgttccttttttgtttgtattacttggcagatggagatgagg 563

                                                                       
Query: 364 acataaatgtgacattgaacaactactggagcccatgttctcaaattttggttgagtcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acataaatgtgacattgaacaactactggagcccatgttctcaaattttggttgagtcac 623

                                                                       
Query: 424 aggtgttgcctagatctggtgccaaggtttgaggctgtctgataactgtgcacacaccct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggtgttgcctagatctggtgccaaggtttgaggctgtctgataactgtgcacacaccct 683

                                                                       
Query: 484 tttatctctagatattgcccatgaagaggctgtataataagaagagagtttacaatanag 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 684 tttatctctagatattgcccatgaagaggctgtatattaagaagagagtttacaataaag 743

                                                                       
Query: 544 gttagcctagaataatagttttctaaatgagaggtaatatttcctttagtatttccagta 603
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 gttagcctagaataatagttttctaaatgataggtaatatttcctttagtatttccagta 803

                                                
Query: 604 actagaagagaatttgattagggaactttcttgtaat 640
           |||||||||||||||||||||||||||||||||||||
Sbjct: 804 actagaagagaatttgattagggaactttcttgtaat 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_e13.g1 MSMg01no046_e13.g1 CHROMAT_FILE:
MSMg01no046_e13.g1 PHD_FILE: MSMg01no046_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:25 2005
         (586 letters)



>mm_chr4_36289327_36290312
          Length = 986

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 119 ttgcattcatcccacaattctttaggtgacatatttgaaatttataactgatgccaactt 178
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 786 ttgcagtcatcccacaattctttaggtgacatatttgaattttataactgatgccaactt 727

                                                                       
Query: 179 agatttatctaaagttttcagccttttttgtatcattattcattatcttaaaactgaatc 238
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 726 agatttatctaaagttttcagccttttttgtatcattatgcattatcttaaaactgaatc 667

                                                                       
Query: 239 aattcagttgtttcttatgagtagaaaaataggttatgtaagtattttgctatcaaagtt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aattcagttgtttcttatgagtagaaaaataggttatgtaagtattttgctatcaaagtt 607

                                                                       
Query: 299 acaaacttgtcttagtttgctttcagttgcaaaactaaaaaacaaaagacaaaaaacaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acaaacttgtcttagtttgctttcagttgcaaaactaaaaaacaaaagacaaaaaacaaa 547

                                                                       
Query: 359 agcacatcaaaccaaccaaccaaacatcaacaaaacccacaatgacttaatccaacagaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agcacatcaaaccaaccaaccaaacatcaacaaaacccacaatgacttaatccaacagaa 487

                                                                       
Query: 419 gggaagaaaatgcttataccatgatatgcctccaagttgcaattcatcgttgaaaatgtc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggaagaaaatgcttataccatgatatgcctccaagttgcaattcatcgttgaaaatgtc 427

                                                                       
Query: 479 aggacaggtatccaaggtagtgaatacctgagaccttagagaataggaaaaataagatta 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggacaggtatccaaggtagtgaatacctgagaccttagagaataggaaaaataagatta 367

                                                           
Query: 539 tagataattactctattggaatattgtcaaatattttcattatttaga 586
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagataattactctattggaatattgtcaaatattttcattatttaga 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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