BAC Information

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BAC

Clone NameMSMg01-046F11
Chromosome4 (Build37)
Map Location 75,710,822 - 75,711,468
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046F11.T7 (MSMg01no046_f11.b1)MSMg01-046F11.TJ (MSMg01no046_f11.g1)
ACCAG276741AG276742
length694691
length of high quality
(start - end)
651 (44 - 694)556 (73 - 628)
definitionCHROMAT_FILE: MSMg01no046_f11.b1 PHD_FILE: MSMg01no046_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:29 2005CHROMAT_FILE: MSMg01no046_f11.g1 PHD_FILE: MSMg01no046_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAGGTACTCTAAATAATGAGTTGTCTTGTTTTATGTAATCCATCT
ACCTCCTATGTCATTTTATGCTTCAGTTACTTCGAATGCTTTAAATAAAA
GAAAAAGGGGGAGAAACAGTAGACTGGAAGGAAGGTAGATGCTTAAAGTG
GCAGTTCACATTAACATTTAATAGGTATATGCCTAACTGTGTCCTAATCA
AGGCTTAAATCTGACAGGTTTGACAAGTGAGTTGAACTGCTCTCTTTATA
CAAGAAGCCCACAATTTATGAAAGGTCTTTGTATCAGGTGCTTTTCTGTA
CAGCAGGGCTTCTCTTTAGATGACTAGAGGAATTAGCCTATGAAAAAATC
AGAACACAAAAGTAGCCTCATTTACCTTTGGGTATAAATGTCATTTGATA
GCCTTCCTGGAATTTCAGTACATCAGGATGTTCTGTCTTATCTAGTTGAA
TCTTTTAATAAAGTATCAGGGGAATGGGACATTAGAAATCATTTTTTCTT
TAAAAATGAAATAGATACTTGAGAGGACATTTCTTTATATAATTCTAGAA
ATGTTTCTGATGATGCACTTAAAGCACTTGGGTAAACCACAGAATTTAGC
AAATCTCACCCAATCCTACAGAATGATGATGGAGTCTTCCTTGG
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCACTAAAGCCATCTGGCCCTTGGGGC
ATTTTTATTTGGCTGGAAGGTTTTTAATGACTTTTTCTACATCCTTAAGA
GATATGAGCCTATTTAGATAGCTTACCTGCTCTTGATTTAACTTTGATAT
ATGTTATCAGTCTTGAAAATCATCCATTTAATCTAGAGTTACCTTTGCTA
CAGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGCTTTTTGTTTTG
TTCTATTTGGTTGATTTCAGCCCTGACTTTGACTATTTCCTGCCATCTGT
TCTCCTTGGGTGTGTTTCCTTTTTTTTGTTCGAGGGCTTTCAGGTGTGCT
GTTAAGTTGCTAATGTAAGATTTCCCCAATTTCTTGAAGAGGGCACTTAG
TGCAATGGATTTTCCTCTTAGCACTGCTTTCATTGTGTCCCATAAATTTG
AGTATGCTATGCCATCATTTTCATTGTATTCTAGGAAGTCTTTAATTTTT
TTCTTTATTTCTTCCCTGACCAAGTTATCATGGAGTAGAGAGTTGATAAA
TTTCCTTGGGTATATAGGCCTACTGTTGTTTTTCTTGTTATTGATGTCTA
GCCATACTCCTTAGTCCATGGTGATCTGATCATGGGATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_f11.b1 MSMg01no046_f11.b1 CHROMAT_FILE:
MSMg01no046_f11.b1 PHD_FILE: MSMg01no046_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:29 2005
         (651 letters)



>mm_chr4_75710618_75711668
          Length = 1051

 Score = 1181 bits (611), Expect = 0.0
 Identities = 638/647 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaggtactctaaataatgagttgtcttgttttatgtaatccatctacctcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcctaaggtactctaaataatgagttgtcttgttttatgtaatccatctacctcct 792

                                                                       
Query: 65  atgtcattttatgcttcagttacttcgaatgctttaaataaaagaaaaagggggagaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 atgtcattttatgcttcagttacttcgaatgctttaaataaaagaaaaagggggagaaac 732

                                                                       
Query: 125 agtagactggaaggaaggtagatgcttaaagtggcagttcacattaacatttaataggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agtagactggaaggaaggtagatgcttaaagtggcagttcacattaacatttaataggta 672

                                                                       
Query: 185 tatgcctaactgtgtcctaatcaaggcttaaatctgacaggtttgacaagtgagttgaac 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 671 tatgcctaactgtgtcctaatcaaggcttaaatctgacagatttgacaagtgagttgaac 612

                                                                       
Query: 245 tgctctctttatacaagaagcccacaatttatgaaaggtctttgtatcaggtgcttttct 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct: 611 tgctctctttatacaagaagcccacagtttatgaaaggtctttgtatcaggcgctcttct 552

                                                                       
Query: 305 gtacagcagggcttctctttagatgactagaggaattagcctatgaaaaaatcagaacac 364
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 551 gtacagcagggcttctcttcagatgactagagaaattagcctatgaaaaaatcagaacac 492

                                                                       
Query: 365 aaaagtagcctcatttacctttgggtataaatgtcatttgatagccttcctggaatttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaagtagcctcatttacctttgggtataaatgtcatttgatagccttcctggaatttca 432

                                                                       
Query: 425 gtacatcaggatgttctgtcttatctagttgaatcttttaataaagtatcaggggaatgg 484
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 gtacatcaggatgttctgtcttatctagttgaatcttttagtaaagtatcaggggaatgg 372

                                                                       
Query: 485 gacattagaaatcattttttctttaaaaatgaaatagatacttgagaggacatttcttta 544
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 371 gacattagaaatcattttttctttaaaaatgaaatagatacttgagaggatatttcttta 312

                                                                       
Query: 545 tataattctagaaatgtttctgatgatgcacttaaagcacttgggtaaaccacagaattt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tataattctagaaatgtttctgatgatgcacttaaagcacttgggtaaaccacagaattt 252

                                                          
Query: 605 agcaaatctcacccaatcctacagaatgatgatggagtcttccttgg 651
           ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 251 agcaaatctcacccaatcctacagaatgatgatggtgtcttccttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)