BAC Information

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BAC

Clone NameMSMg01-046G23
Chromosome4 (Build37)
Map Location 116,994,861 - 117,134,596
singlet/doubletdoublet
Overlap gene4931406I20Rik
Upstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046G23.T7 (MSMg01no046_g23.b1)MSMg01-046G23.TJ (MSMg01no046_g23.g1)
ACCAG276812AG276813
length676690
length of high quality
(start - end)		535 (59 - 593)545 (74 - 618)
definitionCHROMAT_FILE: MSMg01no046_g23.b1 PHD_FILE: MSMg01no046_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:35 2005CHROMAT_FILE: MSMg01no046_g23.g1 PHD_FILE: MSMg01no046_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,134,062 - 117,134,596)(116,994,861 - 116,995,405)
sequence
GCGGCGCTATACGACTCCTATATCCAGAAATCCGCGGAATTCACTATGAA
TATCGGCTGGTCTGGAATTCAGAGATCCTCCTGTCTCTGCCTCCCAGGTG
CTGGGATTATTGGTGTGTGCAACCATTCCTGCCAACATTTTTAGTATTTT
TAGATTTGGGTTCCTATGGGAAATGCTGCTGTTAGCATTTTAAAATCCAT
TCTTATATTTAAGACAAGTTGCTTTATGGCCACATCAAGGATTAGGGTTT
CTTCAACCTTACTGGCTAATGTTCAATTGCATTCAAAAGATGTACTACCA
GTTTTCTCCTTTATTTCTTTTTATCTTATACAGCAGTTGCTACATGATGG
AGAATACAGACTGTCACAGTTGTTTCCTGCTTTTCCTTGAATACCTCACC
CCTTATTAGTACACAGTAATGGTACACAATCATGAATTTCTTCATGACAT
TTTCATACAAGTACATGACGTAATATGATCATGTTCCTACCCCTCCCCAT
TGTCCCTCTTGTCCTCTCTCTCTCTCTAAGCTTATCTTTCTAGGAGCATC
TTGTTGCCCTTAGCATGGTGACTTCCAGTCCCACTGGTTTCTTGTGAATG
TGCCATTCTTCCACGTGGTTGAAAAGCTTCACTGTGGATCTGCACATTTT
CTCATTCATTCATCTGCTGCTGGACC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACGTCTTCACTCCCAGGAGCCCAGCTT
CCGTCTCAAGCCCCTAAATCAGGAACCAAGATGGGCTATTGTCAGTTACC
GCATTAGCCTCGTTAGCGGACCAGGAGGGGTGATTAATAGCAACGCACAC
ACAGCCATCCTCCTAGTTGCTGCTCCTGCTGCTACTTCTGACCTGGGAGG
GGGGTGGGGAGCAGCAGAGCCTGCTCCATGATGGCAACTCCTTTCCCAGA
ACCAGGCAGGAAAGTCCAGATCTGGGCGTGGGAGCAGTTAAAGGTTAGCA
AGCCCAGCCTTTGGGGCCCAGCTCCTGGGGTGAAGGACAGAGGAGGAGCT
GGACGGGAATATTTGCTTCATTTCCCAAACACTCTTTTAGTGGTGTTATG
ATGGGCCGGCGACAATCTAAGAACTGGGATGAGAGACAGGCGATGAGCAG
GAGAAAGGACAGGAAGCTGTGTGTGGGAGCTGTGGACAAGGGATGTCGAT
GCAGGAAGGACACAGACTATTGTGTGTGAAGAACGTGAGGGGTGTGGCTG
GGAGAAGGGTGTACCATGAGTTTGGAATCAGGCTAACCTGGGCTTTCAGT
TCTGGCTACTTTATACATATTTATTTATCCACCTTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_g23.b1 MSMg01no046_g23.b1 CHROMAT_FILE:
MSMg01no046_g23.b1 PHD_FILE: MSMg01no046_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:35 2005
         (535 letters)



>mm_chr4_117133777_117134711
          Length = 935

 Score =  996 bits (515), Expect = 0.0
 Identities = 530/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtctggaattcagagatcctcctgtctctgcctcccaggtgctgggattattggtgtgt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 820 ggtctggaattcagagatcctcctgtctctgcctcccaagtgctgggattattggtgtgt 761

                                                                       
Query: 61  gcaaccattcctgccaacatttttagtatttttagatttgggttcctatgggaaatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gcaaccattcctgccaacatttttagtatttttagatttgggttcctatgggaaatgctg 701

                                                                       
Query: 121 ctgttagcattttaaaatccattcttatatttaagacaagttgctttatggccacatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctgttagcattttaaaatccattcttatatttaagacaagttgctttatggccacatcaa 641

                                                                       
Query: 181 ggattagggtttcttcaaccttactggctaatgttcaattgcattcaaaagatgtactac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ggactagggtttcttcaaccttactggctaatgttcaattgcattcaaaagatgtactac 581

                                                                       
Query: 241 cagttttctcctttatttctttttatcttatacagcagttgctacatgatggagaataca 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 580 cagttttctcctttatttctttttaccttatacagcagttgctacatgatggagaataca 521

                                                                       
Query: 301 gactgtcacagttgtttcctgcttttccttgaatacctcaccccttattagtacacagta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 gactgtcacagttgtttcctgcttttccttgaatacctcaccccttattagtacacagaa 461

                                                                       
Query: 361 atggtacacaatcatgaatttcttcatgacattttcatacaagtacatgacgtaatatga 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atggtacacaatcatggatttcttcatgacattttcatacaagtacatgacgtaatatga 401

                                                                       
Query: 421 tcatgttcctacccctccccattgtccctcttgtcctctctctctctctaagcttatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcatgttcctacccctccccattgtccctcttgtcctctctctctctctaagcttatctt 341

                                                                  
Query: 481 tctaggagcatcttgttgcccttagcatggtgacttccagtcccactggtttctt 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctaggagcatcttgttgcccttagcatggtgacttccagtcccactggtttctt 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_g23.g1 MSMg01no046_g23.g1 CHROMAT_FILE:
MSMg01no046_g23.g1 PHD_FILE: MSMg01no046_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:35 2005
         (545 letters)



>mm_chr4_116994661_116995605
          Length = 945

 Score = 1054 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtcttcactcccaggagcccagcttccgtctcaagcccctaaatcaggaaccaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgtcttcactcccaggagcccagcttccgtctcaagcccctaaatcaggaaccaagatg 260

                                                                       
Query: 61  ggctattgtcagttaccgcattagcctcgttagcggaccaggaggggtgattaatagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctattgtcagttaccgcattagcctcgttagcggaccaggaggggtgattaatagcaa 320

                                                                       
Query: 121 cgcacacacagccatcctcctagttgctgctcctgctgctacttctgacctgggaggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcacacacagccatcctcctagttgctgctcctgctgctacttctgacctgggaggggg 380

                                                                       
Query: 181 gtggggagcagcagagcctgctccatgatggcaactcctttcccagaaccaggcaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggggagcagcagagcctgctccatgatggcaactcctttcccagaaccaggcaggaaa 440

                                                                       
Query: 241 gtccagatctgggcgtgggagcagttaaaggttagcaagcccagcctttggggcccagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccagatctgggcgtgggagcagttaaaggttagcaagcccagcctttggggcccagct 500

                                                                       
Query: 301 cctggggtgaaggacagaggaggagctggacgggaatatttgcttcatttcccaaacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggggtgaaggacagaggaggagctggacgggaatatttgcttcatttcccaaacact 560

                                                                       
Query: 361 cttttagtggtgttatgatgggccggcgacaatctaagaactgggatgagagacaggcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttagtggtgttatgatgggccggcgacaatctaagaactgggatgagagacaggcga 620

                                                                       
Query: 421 tgagcaggagaaaggacaggaagctgtgtgtgggagctgtggacaagggatgtcgatgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcaggagaaaggacaggaagctgtgtgtgggagctgtggacaagggatgtcgatgca 680

                                                                       
Query: 481 ggaaggacacagactattgtgtgtgaagaacgtgaggggtgtggctgggagaagggtgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaaggacacagactattgtgtgtgaagaacgtgaggggtgtggctgggagaagggtgta 740

                
Query: 541 ccatg 545
           |||||
Sbjct: 741 ccatg 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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