CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATCCATCAGTCAGGCACGGAAGGACAGTGTTCAGGTGTGATGGC
AGCCTCACCTCATGAACGCCCAACTCGGGATCTGGATCTGAAAGACCCCC
AAGGGCACGAACCCCATTGGCATCAAGTGAGGAAAGGTCTAGGGAGGAAT
CCCCAGCATCCAGGGCCCCAGGGCAAGTGGCAGGAAGTGGAGAATAGCTA
TAAATGTGAGGAGGTTTCGAGCCTCCAGGCCAGGGTGCTAATGATGCAGG
GAGGCCAGCCATCTGAAACCCCCTGGCAGCACCCAAGCATAGCCAGCCTG
CTCTCCACTGTAGGAAAAGAGAAACTGAGGCTGAGGAGGACTTCTCTGGA
ACAAGTCCCCACTCAGGATGGAGGATGGAGGGAGCTCCCGGGAAGAAGGG
GGAAGGCCCTGGTGTAGGTGGACAAGAAACAGGGGCTCAGGCACAGAGCC
CCCAGCTGCCCAGGCCAGTCTGCACCACCTTAAGTGACACCTATGGTGTG
AGTGGGTGATACATCGTCACCACCAGATTCAGCCCTGGGATGCTGTTGCC
ATCTGTCCCTATGGGCCTGTGTCCCCCATACCTCACAGAAACCCTGTTCA
TCTATGCCTGTCCACAGCTCAGTTTCTCCAAGACACCCC

TTTTTTTTTTTTTTNNTTTTTNTTTTTTTTTTTTTTTCCTNNNNNNCTTT
NNCCTGTNCTCTGTGTCATTTTTCACCCGGATAGCAGTGTGGCGAGGCCG
AGGGGAAACCGCGTGCATGCAGGTAGCGTGAGGGNGGNGGGNGGNGGGGT
TTTTCCGCAAAAAAGAGGGGGGCGGAAGCTGGGTCTCGCGTTCGCGTACG
CGCATAAGCAGGTAGCATGGTTTTGGGCGTCACGGCAGCCCGTTAGTAGG
AAACCACGTACACTAATAGCACGGCCCCCTTTGCCGCTCTGTTGCCGCGC
GTGCGCATCGTAGGTTGTTTGGTTTCTACTGTCCGTTTTCCCGGTTGGGT
GGTGCGAGCATGATCGGCGCTGGACGCGCGTCGTAGCGATGTTCGGCGCG
TTATTTCTGCTGTTTGTCTCTTCCCGCTTAGATTTGTCTTTGTCTAAAAT
AGTAAAATAGAGGTGTGGGTTCGCGATTCAAGGATATACATTATTTGATA
TAAGGTTGAATTAACTTTAATATTTACCACTATAAGTTTAGTAGTGTTGA
GACCGGTAACCTCCGCTATCAGAGGTAGACTGGGTGCATAATACGTAGTG
CTTTATACTGTGTACGGATGTATATTGCATACGGGTGGTGGCGGTGCGCT
GTTCTAGAGTCTTGTAGTTGCGATATGCGCGATGTGGCGTTATTGCGGTT
TTTTCGGCGTTGTGCGGGCAATTTGGGCTTCTTTGTCTGGCATGTGTCGA
ATGTTAGCATGCGCTATTCAGGCCTACTTAACCCTCCATTAGGCTTGGAG
ATTTAACCTGTCGGTGTCACAGAAATACAGCACGGCGCGAGTTGGTTGAT
AGCTGGGTGCTATACTCATTTCGACTTCGGTTATTCGCCCTCTGTTCCGC
CTTATTATCGCATCTGTATGTGTCTGTTGGGTCGTGTCTTTTTGGGCGAT
GCAAACGTATCTCTACATTATATGGCGTACTTTTCGATCCATGTGCATCG
CCATCGTTTGCAGAGTGACTTTTCTGCTCAATTTGTCTGCCCTG

Query= MSMg01no046_m03.b1 MSMg01no046_m03.b1 CHROMAT_FILE:
MSMg01no046_m03.b1 PHD_FILE: MSMg01no046_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:59 2005
         (534 letters)



>mm_chr4_106147979_106148912
          Length = 934

 Score =  841 bits (435), Expect = 0.0
 Identities = 528/603 (87%), Gaps = 73/603 (12%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatccatcagtcaggcacggaaggacagtgttcaggtgtgatggcagcctca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggaattcacatccatcagtcaggcacggaaggacagtgttcaggtgtgatggcagcctca 253

                                                                       
Query: 64  cctcatgaacgcccaac----------tcgggatctggatctgaaagacccccaagggca 113
           |||||||||||||||||          |||||||||||||||||||||||||||||||||
Sbjct: 254 cctcatgaacgcccaaccctgcccaactcgggatctggatctgaaagacccccaagggca 313

                                                                       
Query: 114 cgaaccccattggcatcaagtgaggaaaggtctagggaggaatccccagcatccagggcc 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cgaaccccattggcatcaagtgaggaaaggtctagggaggaatccccagcatccagggcc 373

                                                                       
Query: 174 ccagggcaagtggcaggaagtggagaatagctataaatgtgaggaggtttcgagcctcca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccagggcaagtggcaggaagtggagaatagctataaatgtgaggaggtttcgagcctcca 433

                                                                       
Query: 234 ggccagggtgctaatgatgcagggaggccagccatctgaaaccccctggcagcacccaag 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggccagggtgctaatgatgcagggaggccagccatctgaaaccccctggcagcacccaag 493

                                                                       
Query: 294 catagccagcctgctctccactgtaggaaaagagaaactgaggctgaggaggacttctct 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catagccagcctgctctccactgtaggaaaagagaaactgaggctgaggaggacttctct 553

                                                                       
Query: 354 ggaacaagtccccactcaggatggaggatggagggagctcccgggaagaagggggaaggc 413
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 554 ggaacaagtccccactcagggtggaggagggagggagctcccgggaagaagggggaaggc 613

                                                                       
Query: 414 cctggtgtaggtggacaagaaacaggggctcaggcacagagc-----c------------ 456
           ||||||||||||||||||||||||||||||||||||||||||     |            
Sbjct: 614 cctggtgtaggtggacaagaaacaggggctcaggcacagagcttgggcagaggggagaag 673

                                                                       
Query: 457 ----------c---------------------------ccagctgcccaggccagtctgc 479
                     |                           ||||||||||||||||||||||
Sbjct: 674 gaaggtagagcaatgagaaagcagggtcactggggtctccagctgcccaggccagtctgc 733

                                                                       
Query: 480 accac-cttaagtgacacctatggtgtgagtgggtgatacatcgt-------caccacca 531
           ||||| || ||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 734 accactct-aagtgacacctatggtgtgagtgggtgatacatcgtacatcgtcaccacca 792

              
Query: 532 gat 534
           |||
Sbjct: 793 gat 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)