Query= MSMg01no046_n22.b1 MSMg01no046_n22.b1 CHROMAT_FILE:
MSMg01no046_n22.b1 PHD_FILE: MSMg01no046_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:07 2005
(666 letters)
>mm_chr4_96411673_96412738
Length = 1066
Score = 1257 bits (650), Expect = 0.0
Identities = 659/662 (99%)
Strand = Plus / Minus
Query: 5 gaattctctgtgactttctaataaatggtaattaaggaggacagagaaagaacaggaggc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gaattctctgtgactttgtaataaatggtaattaaggaggacagagaaagaacaggaggc 647
Query: 65 aatctaatactctaaaattatattggcaaaattaaatgcttcaaaccagtttagaacaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aatctaatactctaaaattatattggcaaaattaaatgcttcaaaccagtttagaacaca 587
Query: 125 cgtgcacacgccaaattgtgttgggggaggagataaataataaagctgctatggaggctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cgtgcacacgccaaattgtgttgggggaggagataaataataaagctgctatggaggctt 527
Query: 185 cctgaatagagtagagcaattgacatagccacaagtaggacttaccatacacatctggcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cctgaatagagtagagcaattgacatagccacaagtaggacttaccatacacatctggcc 467
Query: 245 cattatagaaaatggagttaggttggaaaggactgtttttgccaatcccggggacaaagg 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 466 cattatagaaaatggagttaggttggaaaggactgtttttgccaatcctggggacaaagg 407
Query: 305 caacagtttaggagacaaaggaaacatgaggtgtcttatttggcatttgctgttaaaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caacagtttaggagacaaaggaaacatgaggtgtcttatttggcatttgctgttaaaagg 347
Query: 365 gaataggaaaggggttaagtaaagaactattagagatgtgctgttgtctgccttttggct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaataggaaaggggttaagtaaagaactattagagatgtgctgttgtctgccttttggct 287
Query: 425 cagtgttagatagcccacccagcttcccatccacattctaaaaatgatgaggatgctaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cagtgttagatagcccacccagcttcccatccacattctaaaaatgatgaggatgctaat 227
Query: 485 aacattgttactatttatagagaacatttatagaccttaaacaattctaagcaacatttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aacattgttactatttatagagaacatttatagaccttaaacaattctaagcaacatttc 167
Query: 545 aagtgctattaaatattaactcttttaattcctgtgacagctaggaattaaaggtagtta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aagtgctattaaatattaactcttttaattcctgtgacagctaggaattaaaggtagtta 107
Query: 605 ctattctatttttcaagcgaggaaactgaggtagcatgtggagaccaaaacctatataca 664
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 106 ctattctatttttcaagcgaggaaactgaggtagcatggggagaccaaaacctatataca 47
Query: 665 cc 666
||
Sbjct: 46 cc 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_n22.g1 MSMg01no046_n22.g1 CHROMAT_FILE:
MSMg01no046_n22.g1 PHD_FILE: MSMg01no046_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:07 2005
(636 letters)
>mm_chr4_96239550_96240586
Length = 1037
Score = 1180 bits (610), Expect = 0.0
Identities = 631/638 (98%), Gaps = 3/638 (0%)
Strand = Plus / Plus
Query: 1 tctcctaccagtagtcctcatagtttataagcaggatctcctattattcaggtatctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcctaccagtagtcctcatagtttataagcaggatctcctattattcaggtatctcta 260
Query: 61 gtctagactcaaactttgtgggtgtttagtaaacattcccttgattaataagtaataact 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gtctagactcaaactttgtgggtgtttagtaaacatccccttgattaataagtaataact 320
Query: 121 tctgttctgagtataaggttatgtatataaaatctacttttatttccaaatggagcttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttctgagtataaggttatgtatataaaatctacttttatttccaaatggagcttat 380
Query: 181 aaattgggttgaatgaattttgtagaagctgaaggtataattgggtaggaaatgtgatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattgggttgaatgaattttgtagaagctgaaggtataattgggtaggaaatgtgatat 440
Query: 241 gcttgtactgtggtagaaagtgaaatcagcattggaataggcctgtctgtttcaaggcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgtactgtggtagaaagtgaaatcagcattggaataggcctgtctgtttcaaggcca 500
Query: 301 tggttgtctgcatcctttaa-cagagtcatttataattcttaatacccagagagatgatg 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttgtctgcatcctttaaacagagtcatttataattcttaatacccagagagatgatg 560
Query: 360 ttataatctgaaaaaaaaagttggtttggttatttgaagataaatcaatggacagagaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttataatctgaaaaaaaaagttggtttggttatttgaagataaatcaatggacagagaaa 620
Query: 420 cacca-agaacattggaaaaattctgactaaacttcaagccatgaattgctctatagtaa 478
||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 cac-agagaacattggaaaaattctgactaaactccaagccatgaattgctctatagtaa 679
Query: 479 acataaggacagctctctgcttcagcagcaaaggtcctttgccactattagaacagaaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acataaggacagctctctgcttcagcagcaaaggtcctttgccactattagaacagaaaa 739
Query: 539 atgctgagacatccattagcaaacaaagccaggttccatctaaatacatctgatctacga 598
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 740 atgctgagacatccattagcaaacaaagccaggttccatctaaatacatatgatctacaa 799
Query: 599 atcttcctttctagactcctcatagtagatttgaatat 636
||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atcttcctttctagactcctcatagtagatttgaatat 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
