Query= MSMg01no047_b04.b1 MSMg01no047_b04.b1 CHROMAT_FILE:
MSMg01no047_b04.b1 PHD_FILE: MSMg01no047_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:21 2005
(356 letters)
>mm_chr4_63146597_63147352
Length = 756
Score = 630 bits (326), Expect = 0.0
Identities = 344/350 (98%), Gaps = 2/350 (0%)
Strand = Plus / Plus
Query: 5 gaattccagcccagagaggggtgcataaagagacctgatctcaaaccaagcaaagccaag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcccagtgaggggtgcataaagagacctgatctcaaaccaagcaaagccaag 264
Query: 65 caaaacaaacaaacaaacaaacaaacaaacacaacccaaaaatccaacactgacaaaggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaacaaacaaacaaacaaacaaacaaacacaacccaaaaatccaacactgacaaaggt 324
Query: 125 cagggcgtcaccagtgaggaagaacagaaagttaaaaggacagttaaagagtcagtgtga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagggcgtcaccagtgaggaagaacagaaagttaaaaggacagttaaagagtcagtgtga 384
Query: 185 ctcttctccctaaagtctaccatgaaatacaaccacctaggaaaggcagggtggccagaa 244
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 385 ctcttctccctaaagtctaccatgaaatacagccacctaggaaaggcaaggtggccagaa 444
Query: 245 cctcagttttctgcctccttgtgagcttcctcatcaaatggctgcacagagatggataag 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcagttttctgcctccttgtaagcttcctcatcaaatggctgcacagagatggataag 504
Query: 305 gtagacggaagtgatgacagagagcagacaggcggggg-tggggggtggg 353
|||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 505 gtagacggaagtgatgacagagagcagacaggcggggggtggggg-tggg 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_b04.g1 MSMg01no047_b04.g1 CHROMAT_FILE:
MSMg01no047_b04.g1 PHD_FILE: MSMg01no047_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:22 2005
(503 letters)
>mm_chr4_63253054_63253956
Length = 903
Score = 930 bits (481), Expect = 0.0
Identities = 484/485 (99%)
Strand = Plus / Minus
Query: 1 tttacttaacaaaaatatcttcaagaaaaaagttgagacagttcagcaaatactgaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttacttaacaaaaatatcttcaagaaaaaagttgagacagttcagcaaatactgaaaat 626
Query: 61 gtcactgtaagatttgtactgaaagaaggctattccagggaattctcaatatgctgctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcactgtaagatttgtactgaaagaaggctattccagggaattctcaatatgctgctaa 566
Query: 121 acactgctctgcactaagataaggtctaaggttagtcccaggaggaaaaagagacacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acactgctctgcactaagataaggtctaaggttagtcccaggaggaaaaagagacacaga 506
Query: 181 aacaagcataggaatataaaaacagtaactttcaaaggtgataaaaagcaataaaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaagcataggaatataaaaacagtaactttcaaaggtgataaaaagcaataaaaagaa 446
Query: 241 cacggttaaatctaaatgaataatacctgctgtgctctcgaatacagagaactgtgccct 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 cacggttaaatctaaatgaataatacctgctgtgctctcaaatacagagaactgtgccct 386
Query: 301 ggcgagaacagtctcataggcagagtgaagggcagcgtgggctttggttgcccagggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcgagaacagtctcataggcagagtgaagggcagcgtgggctttggttgcccagggaac 326
Query: 361 agtgccatgctcacatgccaaacctcagtcaaccagggatactgttgacctcagatgacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgccatgctcacatgccaaacctcagtcaaccagggatactgttgacctcagatgacc 266
Query: 421 actaaaagaaatggctctcagagggctctaaaatgataattaccaaaataaacaaaactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaaaagaaatggctctcagagggctctaaaatgataattaccaaaataaacaaaactg 206
Query: 481 gggtg 485
|||||
Sbjct: 205 gggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
