BAC Information

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BAC

Clone NameMSMg01-047F15
Chromosome4 (Build37)
Map Location 80,901,366 - 80,901,658
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047F15.T7 (MSMg01no047_f15.b1)MSMg01-047F15.TJ (MSMg01no047_f15.g1)
ACCAG277460AG277461
length761742
length of high quality
(start - end)
332 (46 - 377)297 (75 - 371)
definitionCHROMAT_FILE: MSMg01no047_f15.b1 PHD_FILE: MSMg01no047_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:40 2005CHROMAT_FILE: MSMg01no047_f15.g1 PHD_FILE: MSMg01no047_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTTGGCCCTGGTCAATCCTGCTGCCTTGTGCCAAGGCTAAGGC
CTAGCTGTCTCTGTTAGGTAGTGCCATTGCTACTGATTCCAGCTTGCTAT
CGAGACTCTATTGAACTGGACTGCTGGTATAATCATGAAGTGCTTGCGAG
TGGATCAGGCTGCTCTTAACTAAACAGCTGATTTCCTGACAATACAGATA
GGATTTGCTCCAAAGAACCATTTTTAAACAGGTCTACTTCCCTGATATCC
TTACTTTTCCACTACTTCTGGTGGGTGGTAGGCTAGAAGGGGGGTTAAAG
CATTCCAGACTCATCATTACCAGGAAGCAGGAGCGGGTGGTTTGGGAGCA
GGGTGAGGTCTTCTCCTCCTCTTCTTTTTTATCCCCCTCTCTCTCTTTTC
TCTACCCCCACTCTTATTTACAAACTTCTTCTCTTTTTCTTCCCCTTTTT
CTCCCCATACTACCCTTTTTTCTTTTCTTTTTCTCTATACCACACCCCGC
ATCATTCCACTTTCTCATACCTCCCCACCTTTCTCCTTTTTCATTCTCCC
CCCCTTTTTCTTCTTTCTTTCCCTCCCTCCTTTTTCTCTTTTCCCCCACA
CTCCCTTGTTCTCTCATTCTTTCTTCCCCTCCACCCTTCCTCCTCCTACC
TCTTCTCTCATATCCTTACCCTATTCTTATTTTTTCACCTCTCCTTATTT
TTCTAATCCCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCCCTAGATGTGGTAAGTGGAGAG
TTATGAGAAAAGATGGTAAGACACCCGAGAAGTATGGTTTATGGGAAGAA
CACTGGGTAAACTTACAAAGGCTGTTGGCCAGATTTTGCAGGGTGCCCCA
TTCTTTGAACTAATACTGCAAATCTCCACCCAAGCTCAAGGGGGAAAAGT
TATTTCCTTTTCAACTCGTTCTATACTCAGAATCTTTCCATTAACTATAC
CAGTGGCAGATTAAGTTCTAATTTCTATCTTCAACTACCATGCCCCTTTA
TTAGTCAATTTTTCTTTATTGTCCCGCACTACCAGAGGCCAAATGTGTTA
GATAAAAGTTTATCTAGATGACCGCCTCATAAGGTGAATATTATGACCTC
TTCTCCACTGTGCATCATGTCAATGTTCTAAGGTTTTTTGAATACCACCC
ATTTTGTTAACTTACAGTGTATGTTCCCTCTGTATTTAGATTCTATCACC
TTTCCTCTCACTCCTCCCTCTTCTTCTCGTATATATCTCACCCCTCGGTT
AACCTGTTTCTTCTTTTTCGCCATTTCTCCCGTTTTTTTTAATCCTCCTC
CTCCCTCCTGACCCACCCTCGCATACTTTCTCCTGTTCCCGTCTCCTCTT
CTATTCTACTTTATTTTCCCTCACTCTCTCTATTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_f15.g1 MSMg01no047_f15.g1 CHROMAT_FILE:
MSMg01no047_f15.g1 PHD_FILE: MSMg01no047_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:40 2005
         (297 letters)



>mm_chr4_80901166_80901861
          Length = 696

 Score =  522 bits (270), Expect = e-153
 Identities = 288/296 (97%), Gaps = 5/296 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccctagatgtggtaagtggagagttatgagaaaagatggtaagacaccc--gagaag 58
           |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||
Sbjct: 201 ctgccctagatgtggtaagtggagagttatgagaaaagatggtaagaca---aagagaag 257

                                                                       
Query: 59  tatggtttatgggaagaacactgggtaaacttacaaaggctgttggccagattttgcagg 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 258 tatggtttatgggaagaacactgggtaaacttacaaaggctgttggccagatttcgcatg 317

                                                                       
Query: 119 gtgccccattctttgaactaatactgcaaatctccacccaagctcaagggggaaaagtta 178
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgccccgttctttgaactaatactgcaaatctccacccaagctcaagggggaaaagtta 377

                                                                       
Query: 179 tttccttttcaactcgttctatactcagaatctttccattaactataccagtggcagatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttccttttcaactcgttctatactcagaatctttccattaactataccagtggcagatt 437

                                                                   
Query: 239 aagttctaatttctatcttcaactaccatgcccctttattagtcaatttttcttta 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagttctaatttctatcttcaactaccatgcccctttattagtcaatttttcttta 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 696
Length adjustment: 9
Effective length of query: 288
Effective length of database: 687
Effective search space:   197856
Effective search space used:   197856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)