TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTGCTTTTCAAAGCAATATATATATATATGGAACTGTTAAAT
GAATTAATAACGAACTGGTTAAACAAGTCCACTTTCTCTGTCCATATTTA
CAATGAAAAATACTATTGGAAGGAATACAGGCAGAACCAAGGTACTTACA
TGAAAAAAATTTTTTAAAAATTAAAAATTATGTTACATAGTTAAGTGACT
ATATCAAGATGGAAATATATATATATATATTTCCATTTTAATTTTACAAA
TTACTAACTAGTTAAGTTTTGATGGTGATTATTCATATTAAACAAGTTTC
TACCCCTGAGCCCTAAAGCTTATTTGAAAATACAACTGTGTTGATATATG
CCCAGAAAGAAAACTTTTAAGATGGAACAAACTGCTATGAGGAGTAACCT
CTAGGTCCACTAGGAACCAGAACTAGAGAGCAGTGGAGGAATGACTGTTG
TCATTTTCTTTTAGGTTTCTGATTATCTTTTTTGGCAACAAGGATTATCT
TTGTGTTCTTAAAATGTCCAAAGTGAAATGACATTAACTGTATGTTTATC
AGATACCATCATAAGGAAGCAATTGCTAGTTAAATATTATGTGCCTTAAA
CTCCCAGACATTCTAACCCACCCTTTTTCCATTTACTAAAACAAGGTACT
ATACG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTCTTCCTTCTATCAAAGCTG
ACACTCCCGTCCCCACTCCTACTGCCATACCTATTCCCATGAATGCAGCC
AGGGTTAAAGTAATTGGTTCTCTTTTTGACCGCCGGCCAGCATAGCTTTC
TTCTAAACTGGATGCAGGGTGATAATATACGCGGGGTAACAGCTGGATCA
TGACACAAAAATCATGAGATGAATTAAAAACCTTAGTTGATACACAGGGA
GTAAGTCCTGTATTGCAAGCCCACCATCCAACCGGGGAAGGTACAAGATA
GTAATTAGCTCCCGTTCTGGACACGGACTGAATTTGTCCGCATAGGTGTT
TGTGAGTGGAAGGTGGGGTACCCATATAGAGACCTGTATTCCTCGCGGAT
ACTCCATACAGGGTCTGTTTTTGTCCTGTACCCTTTGAGCTTGCAATATG
CTTTGTGTCTCTGTTGAAATCACCATTGTATGTTAATCTTTTCTACCACG
GCCTCACCTACGTATTCGTTTTACCCGCTATTACCTCACTCCCTCGTCTG
CACATATTTTTCGGTTTCTCTCCTAATACCCCTTTTTTTCTTTTTCTCCT
TTTCTCTCGCCTTATAGGCATCTTCAAACATTTTCGTTTCACTCTTCGCT
ACTAATTCATTTTTTTCTCTTCTCTTACTATTTTTTTTG

Query= MSMg01no047_h13.b1 MSMg01no047_h13.b1 CHROMAT_FILE:
MSMg01no047_h13.b1 PHD_FILE: MSMg01no047_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:49 2005
         (513 letters)



>mm_chr4_70192780_70193692
          Length = 913

 Score =  942 bits (487), Expect = 0.0
 Identities = 507/521 (97%), Gaps = 12/521 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtgcttttcaaagcaatatatatatatat------------ggaactgtta 52
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 193 gaattctctgtgcttttcaaagcaatatatatatatatatatatatatatggaactgtta 252

                                                                       
Query: 53  aatgaattaataacgaactggttaaacaagtccactttctctgtccatatttacaatgaa 112
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatgaattaataacaaactggttaaacaagtccactttctctgtccatatttacaatgaa 312

                                                                       
Query: 113 aaatactattggaaggaatacaggcagaaccaaggtacttacatgaaaaaaattttttaa 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaatactattggaaggaatacaggcagaaccaaggtacttacatgaaaaaaattttttaa 372

                                                                       
Query: 173 aaattaaaaattatgttacatagttaagtgactatatcaagatggaaatatatatatata 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaattaaaaattatgttacatagttaagtgactatatcaagatggaaatatatatatata 432

                                                                       
Query: 233 tatttccattttaattttacaaattactaactagttaagttttgatggtgattattcata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tatttccattttaattttacaaattactaactagttaagttttgatggtgattattcata 492

                                                                       
Query: 293 ttaaacaagtttctacccctgagccctaaagcttatttgaaaatacaactgtgttgatat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttaaacaagtttctacccctgagccctaaagcttatttgaaaatacaactgtgttgatat 552

                                                                       
Query: 353 atgcccagaaagaaaacttttaagatggaacaaactgctatgaggagtaacctctaggtc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atgcccagaaagaaaacttttaagatggaacaaactgctatgaggagtaacctctaggtc 612

                                                                       
Query: 413 cactaggaaccagaactagagagcagtggaggaatgactgttgtcattttcttttaggtt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cactaggaaccagaactagagagcagtggaggaatgactgttgtcattttcttttaggtt 672

                                                    
Query: 473 tctgattatcttttttggcaacaaggattatctttgtgttc 513
           ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 673 tctgattatcttttttggcaataaggattatctttgtgttc 713



 Score = 54.9 bits (28), Expect = 1e-11
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 214 atggaaatatatatatatatatttccat 241
           ||||||||||||||||||||||||||||
Sbjct: 441 atggaaatatatatatatatatttccat 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)