Query= MSMg01no047_o14.b1 MSMg01no047_o14.b1 CHROMAT_FILE:
MSMg01no047_o14.b1 PHD_FILE: MSMg01no047_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:20 2005
(470 letters)
>mm_chr4_27822220_27823089
Length = 870
Score = 855 bits (442), Expect = 0.0
Identities = 460/466 (98%)
Strand = Plus / Minus
Query: 5 gaattcccattagcactgttactgacaattcctcgagagacatatggacagagtattcca 64
||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 670 gaattcctattagcactgttattgacaattccttgagagacatatggacagagtattcca 611
Query: 65 tgaagttggaatgagcagtttgctttttgtttaatttcatgtttctttgggaaaactcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgaagttggaatgagcagtttgctttttgtttaatttcatgtttctttgggaaaactcaa 551
Query: 125 ctcctgatccagaagagcaaggtcctttccacaagcttcctgagcacaaagtatacatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctcctgatccagaagagcaaggtcctttccacaagcttcctgagcacaaagtatacatta 491
Query: 185 ccttagattcatttctaaatggattcaaatcttaatattaagaaagtttccatgaatctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccttagattcatttctaaatggattcaaatcttaatattaagaaagtttccatgaatctt 431
Query: 245 aaattgaactactttaatgttcagttatatttactgaattactttgcctttgttatagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaattgaactactttaatgttcagttatatttactgaattactttgcctttgttatagtg 371
Query: 305 ctttaaatcttctctattttagtttacggttaaatctaattcagattttcaaacaaaaga 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 370 ctttaaatcttctctattttagtttagggttaaatctaattcagattttcaaacaaaaga 311
Query: 365 tgagttgtttggactccacagaataaaacattgaacatattatgatactatattgttctt 424
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 310 tgagttatttggactccacagaataaaacattgtacatattatgatactatattgttctt 251
Query: 425 ggtgagccaaacacccatcatttaaaaaggaatgaaagaaggagaa 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggtgagccaaacacccatcatttaaaaaggaatgaaagaaggagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_o14.g1 MSMg01no047_o14.g1 CHROMAT_FILE:
MSMg01no047_o14.g1 PHD_FILE: MSMg01no047_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:20 2005
(295 letters)
>mm_chr4_27721559_27722254
Length = 696
Score = 530 bits (274), Expect = e-155
Identities = 289/294 (98%), Gaps = 1/294 (0%)
Strand = Plus / Plus
Query: 1 aataaaactctatgttgattcccatcctaggacaaaatatggaaatgaaaattatgatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaactctatgttgattcccatcctaggacaaaatatggaaatgaaaattatgatgt 260
Query: 61 ctgatggtccctgg-tttaaagaatttttcactcatgcaagcaaaaaattccagttcaca 119
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatggtccctggttttcaagaatttttcactcatgcaagcaaaaaattccagttcaca 320
Query: 120 cgtaaagagtagaattcaattttcataataatttctgccttgttgagaaaactgtaaagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cgtaaagagtagaattcaattttcataataatttctgccttgttgagaaaaatgtaaagg 380
Query: 180 ccctttgaaggaaataaagcaaaaatttatttaaagtaagtgcaaaatatgttatttcag 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccctttgaaggaaataaagcaaaaatttatataaagtaagtgcaaaatatgttatttcag 440
Query: 240 tgaatggaaagtcaagtgctagggaacacacacattatattgcttcactttttg 293
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatgaaaagtcaagtgctagggaacacacacattatattgcttcactttttg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space: 196482
Effective search space used: 196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
