Query= MSMg01no048_i17.b1 MSMg01no048_i17.b1 CHROMAT_FILE:
MSMg01no048_i17.b1 PHD_FILE: MSMg01no048_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:36 2005
(745 letters)
>mm_chr4_77123994_77125139
Length = 1146
Score = 1326 bits (686), Expect = 0.0
Identities = 732/750 (97%), Gaps = 7/750 (0%)
Strand = Plus / Plus
Query: 1 gatcccagagggtagtatttttagtcccccatcccatgtaacaccattgcatctttgctg 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 199 gatcccagagggtagtatttttagtcccccatccaatgtaacaccattgcatttttgctg 258
Query: 61 actgaattcatcattaatgtgctcaaagaggcacacacacacatacacacacttacagat 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259 actgaattcatcattaatgtgctcaaagaggcacacacacac--acacacacttacagat 316
Query: 121 gcacacacatgcacacacaggagcacattatagtagaagtataccttggtagaatgaaga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 317 gcacacacatgcacacacaggagcacattaaagtagaagtataccttggtagaatgaaga 376
Query: 181 ----aagtaatataaatgagtagggacaagaaaattctttatgtgtatatatgaatatga 236
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 377 aagtaagtaatataaatgagtaggaacaagaaaattctttatgtgtgtatatgaatatga 436
Query: 237 ctaaaatagattctgtagatataagaaatgtcttaatacaaccttttaacccatgacaga 296
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 ctaaaatagattctgtagatataagaaatgtcataatacaaccttttaacccatgacaga 496
Query: 297 taattaatatgtgctgataaaaatatttataaaacattaaaagagcgcccctactatcaa 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 497 taattaatatgtgctgataaaaatatttataaaacattaaaagagcacccctactatcaa 556
Query: 357 gacccattcaacacaatattttctctaatatccaagtgaaaccagacaacttgttttaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gacccattcaacacaatattttctctaatatccaagtgaaaccagacaacttgttttaaa 616
Query: 417 aatgatcagactgtaaaattttatttaaataaataactatttgacaattcaacaaataat 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 617 aatgatcagactgtaaaattttatttaaataaataactacttgacaattcaacaaataat 676
Query: 477 ttttgcaggtgggccaggtgtctgctcacaactgtcacacaggaaaatattcactgagtt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttgcaggtgggccaggtgtctgctcacaactgtcacacaggaaaatattcactgagtt 736
Query: 537 gggggcgg-caccaaaatgaaacattaagatattttgattcagagaatagaataagcctc 595
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 737 gggggggggcaccaaaatgaaacattaagatattttgattcagagaacagaataagcctc 796
Query: 596 aaggttaagagataaacatttctgaaatgaaaagatctcagaagaagaaatacactgaaa 655
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaggttaagagataaacgtttctgaaatgaaaagatctcagaagaagaaatacactgaaa 856
Query: 656 tgtctaaaatcaccgtgcatctatttcctgtagcttcccactccagaccagcttgtttcc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgtctaaaatcaccgtgcatctatttcctgtagcttcccactccagaccagcttgtttcc 916
Query: 716 aggcctccttcatttaaaaagcctggatat 745
||||||||||||||||||||||||||||||
Sbjct: 917 aggcctccttcatttaaaaagcctggatat 946
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1146
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1136
Effective search space: 834960
Effective search space used: 834960
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_i17.g1 MSMg01no048_i17.g1 CHROMAT_FILE:
MSMg01no048_i17.g1 PHD_FILE: MSMg01no048_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:36 2005
(744 letters)
>mm_chr4_77296803_77297946
Length = 1144
Score = 1377 bits (712), Expect = 0.0
Identities = 733/740 (99%)
Strand = Plus / Minus
Query: 5 taataagtcacatgaccctaaataatctgtttgcatacgagcgtaactaatttcccgtat 64
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct: 944 taataagtcacatgaccctaaataatctgtttgcataagagcgtaactaattgcctgtat 885
Query: 65 atgtttcatacacaggtaagatgtgactaattaaatcccttttggagacattcagtagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 atgtttcatacacaggtaagatgtgactaattaaatcccttttggagacattcagtagag 825
Query: 125 aaggacactttggggtcaatattctgtacttctggacttctctgaatgactaagactctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaggacactttggggtcaatattctgtacttctggacttctctgaatgactaagactctt 765
Query: 185 ggaaagacacaagtatttctggatgtgaacgcactttaaagatagataataccttttgtt 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 764 ggaaagacacaagtatttctggatgtgaacacactttaaagatagataataccttttgtt 705
Query: 245 ccttcaattctgttcagaacctgtattgatttcataatgcatctagttgttctaattgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccttcaattctgttcagaacctgtattgatttcataatgcatctagttgttctaattgtg 645
Query: 305 tttaaaaattactgattaatatgtttataaatattaaaacaccaggaaatactaacagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttaaaaattactgattaatatgtttataaatattaaaacaccaggaaatactaacagaa 585
Query: 365 aggattggtttataatcttttaaaaataaaatgaaaagattaagaataagaagttttggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggattggtttataatcttttaaaaataaaatgaaaagattaagaataagaagttttggg 525
Query: 425 tcattgagctctctccagaatgtgatgaaagagattatcttacaaagcagcttcatttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcattgagctctctccagaatgtgatgaaagagattatcttacaaagcagcttcatttcc 465
Query: 485 tttaatatttctgtgcctaaacttttcagctagtcagattctctaatatatctacattta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tttaatatttctgtgcctaaacttttcagctagtcagattctctaatatatctacattta 405
Query: 545 gtcaataataattcaataagaacttatccatgttaatgtgaactacacataaacaagcat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtcaataataattcaataagaacttatccatgttaatgtgaactacacataaacaagcat 345
Query: 605 acataggtcagttctactatattattatgtacatcaggcatttataataataaaaagtct 664
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 344 acataggtcagttctattatattattgtgtacatcaggcatttataataataaaaagtct 285
Query: 665 ttggagtgagttagccagttgagccaaatctatgaaactggtagtctctccatgcccata 724
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ttggagtgagttagccagttgagccaagtctatgaaactggtagtctctccatgcccata 225
Query: 725 atctgagaagtgaatgagag 744
||||||||||||||||||||
Sbjct: 224 atctgagaagtgaatgagag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1144
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1134
Effective search space: 832356
Effective search space used: 832356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
