Query= MSMg01no048_k03.b1 MSMg01no048_k03.b1 CHROMAT_FILE:
MSMg01no048_k03.b1 PHD_FILE: MSMg01no048_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:47 2005
(679 letters)
>mm_chr4_93768222_93769301
Length = 1080
Score = 1230 bits (636), Expect = 0.0
Identities = 666/681 (97%), Gaps = 9/681 (1%)
Strand = Plus / Plus
Query: 1 taaagaaaagcaggaacactataaatgagccccattagttttagcactttattaatagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagaaaagcaggaacactataaatgagccccattagttttagcactttattaatagca 260
Query: 61 tttaacttgtactattaaactattaacatataataaaaaactagattattgcattagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaacttgtactattaaactattaacatataataaaaaactagattattgcattagcag 320
Query: 121 ggtaaatgtattccagtgaataataataaaccattggcaatttacgaggagctcaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaaatgtattccagtgaataataataaaccattggcaatttacgaggagctcaattta 380
Query: 181 gcttaaattatattgttaacaatatgcctggtttgctcacatgaaacttaaaaacccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaaattatattgttaacaatatgcctggtttgctcacatgaaacttaaaaacccact 440
Query: 241 ctcaagaattcatataaaatcccttatgccatttatgtgtgcttttttt-----gtagag 295
|||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 441 ctcaagaattcatataaaatcccttatgccatttatgtgtgc----tgtaacacgtagag 496
Query: 296 agaatggggagnagactaattgtctaaattaacattccagccagtcttcagaagagccat 355
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 agaatggggagtagactaattgtctaaattaacattcgagccagtcttcagaagagccat 556
Query: 356 ccttgtatcagccttacaaaatgtacacccatcacttcttatattcaatatgctactatt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccttgtatcagccttacaaaatgtacacccatcacttcttatattcaatatgctactatt 616
Query: 416 gatgtagtatctgaggttaggtagtatatatagttttgcctgcaggtacgtatgtgcacc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gatgtagtatctgaggttaggtagtatatatagttttgcctgcaggtacgtatgtgcacc 676
Query: 476 atgagtgttcctggcgtgcaaggaacccaaaggggattgttagatcctcatgaactagag 535
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgtgtgttcctggtgtgcaaggaacccaaaggggattgttagatcctcatgaactagag 736
Query: 536 ttatagataggtgtaagccatagtgtgggttctagtaacaaaactcagactctgtgtagg 595
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttatagataggtgtaagccacagtgtgggttctagtaacaaaactcagactctgtgtagg 796
Query: 596 accaatcctaattgatcctaattactgagctatctctctagcccctcttttcttgaattt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 accaatcctaattgatcctaattactgagctatctctctagcccctcttttcttgaattt 856
Query: 656 gtatgtatccatttgtacttg 676
|||||||||||||||||||||
Sbjct: 857 gtatgtatccatttgtacttg 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_k03.g1 MSMg01no048_k03.g1 CHROMAT_FILE:
MSMg01no048_k03.g1 PHD_FILE: MSMg01no048_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:48 2005
(585 letters)
>mm_chr4_93915617_93916601
Length = 985
Score = 621 bits (321), Expect = 0.0
Identities = 324/325 (99%)
Strand = Plus / Minus
Query: 261 gtccttttgtgatgagatggctgggttttagtgataacatattgttctggccactactga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gtccttttgtgatgagatggctgggttttagtgataacatattgttctggccactactga 926
Query: 321 ttgtgttcttatattctaggcatctgtatttaggttgattattggtttaggtgccaattt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttgtgttcttatattctaggcatctgtatttaggttgattattggtttaggtgccaattt 866
Query: 381 ctaggtttatctttgttgggtgggtgctttgttcctttgtttctgttttctttctggatt 440
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 865 ctaggtttatctttgttgggtgggtgctttgttcttttgtttctgttttctttctggatt 806
Query: 441 ttcagagcttgtgatagctggaatggctgtgtgtttcatattttactgaccttctcagct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttcagagcttgtgatagctggaatggctgtgtgtttcatattttactgaccttctcagct 746
Query: 501 ggtgtgttcatagagaatgcctgtttagatgctggggtgcagtaatgagtgtgagaagtg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtgtgttcatagagaatgcctgtttagatgctggggtgcagtaatgagtgtgagaagtg 686
Query: 561 aggtctggggcagtggtggggaaca 585
|||||||||||||||||||||||||
Sbjct: 685 aggtctggggcagtggtggggaaca 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
