BAC Information

Click to search

BAC

Clone NameMSMg01-049L01
Chromosome4 (Build37)
Map Location 4,103,868 - 4,103,989
singlet/doubletsinglet
Overlap geneA830012C17Rik
Upstream geneEG666464, LOC100039044, LOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1
Downstream geneLOC100039297, LOC622019, Impad1, LOC100039338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049L01.T7 (MSMg01no049_l01.b1)MSMg01-049L01.TJ (MSMg01no049_l01.g1)
ACCAG279046AG279047
length1,2331,361
length of high quality
(start - end)
130 (34 - 163)99 (80 - 178)
definitionCHROMAT_FILE: MSMg01no049_l01.b1 PHD_FILE: MSMg01no049_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:58 2005CHROMAT_FILE: MSMg01no049_l01.g1 PHD_FILE: MSMg01no049_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTACTATGGNCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTATC
CCTGAGACGAATGCTTTCTTTGTAATCACTTCAAGAGCTGTAGGAGAGGA
GCTTCCCCATTCTCTAAGATACAACTGTTTTTCACCGTACTCTAAGATAT
ATGTCTTTTCAGTGTTTTAAATGAAAAGAANAAGAAAAAAAAGTCCAATC
TCTATGTGTTTAAAGATATATGTAGGTGTGTGTGTNCNTTNTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTNNNNT
TNTTTNTTTTTTTTTTTTTTTTTTTTTNTTCCCCCNNNCNNNNNNNNNNN
NNNNCNNNNNNNNNNNNNNNCTCACCNNNNNNNCNNNCCNNCNCCNCCCC
CNCCCCTCCCCCNNNNCNNNNNNNNNNNTTCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTTTNCCNNNNNNNNNNNNATTTCCCNNCCNNN
NNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNN
NNNNNNNNNNCNCNCCCCCCCCCCCCCCCCCCCNNCCCCCCNTTCCCNNN
NCTTCCCCNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTNNCNNNNNNNNNNNNNNNNNCCANNCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNN
NNNTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACCACNNNNNNNNNNC
TTTTTTAGAGGTGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTTGGCTTAGCTCAGGAAGCTCTTGCAGA
GTGGCTATAGAGTAGGGCCAGCTTCAGCACGGTTTATTCTCCTTTTCACA
ATTCCACAAACAGATAGGACTCTTGAAAGAAAAGGTAACCTAGGGTCTGG
TCATCAGAACTGATTTTAAATGAAAGCCATGGGGGGGGGGGGGAAAGGAA
AAAANAAANNNNGAGAAAAAAACCAAATTTGTGTTTAAATTAAAAATAAA
TGGTTTGGGTAAAACTTTGAATTTTATTTTTAAAAGGGGAAATAATGGGG
NNNNNNNNNCNANNCNNNNNNNNATCNNGGNNAAANNAANNNNNNTTTAA
NCTTTTCCANAANCAAACAAATCTCCTATAAAACTACCCGGGGGGGCCCC
CCCCCCCGGCNNNGCCGGCGCCCCCGGCCTACCCCNNNNNNCNCNNCACT
CCCTAANCAGGCNNNNNNNNANNNNNNNNNNNNNNNNNNNTTATTCAAAA
CAACCNNACCNATCCTTCTAATAAATTCTAAATCTTCTTCATTACTTTTT
TTCTCACCAACCCNNNCNNCNNNNNNNNNNNNNNCNNNNNNCNNNNNNNN
NNCNNNCNNNNNNNNNCNNNCCCNNCCNCCTACCCCNNNNNNNNNNNNNN
NCCNNCNNNNNNNNNCCCNCTAANCNNNCNNNNNCNNNNCNNNNNNNNNN
NNNNNNNNNNNNNNNCCCNCNNNNNNNNNNNNNNCNNCNNNNNNNNNNNN
NNNCNNNNNNNNNNNNAAANNNNNNCCCNNNNNNCNNANNNNNCNCNCNN
CCTGCNCCCCNNANNCNCNNCNCCACCCCCNCCCNNNNNNNNNNNNNCCN
NNCNCNNNNNNCNNNNNNNNNCNNNNNNNNNCNCCGAGAGCCCNNCCNCT
CCCCNNNNNNNNNNNNNNNNNNNNNNCNNNNNNCANNNCCNNNNNAAAAA
ANNNNNNNANNANNCNNNCGAANNAAACAAAACACCNCNAAACAAACCAA
CCAAAAACCCCCACAACAAAAANANAAAACCATTTTTTCCNTTTCNTTTT
TTTTTNTTTTTTTTTTATTNTTTTTTTTATTTTTTTTTTTTTTTTTTCTT
TTTTCAATTACATTTTTATATATATTATTAATCTATATTTTAATTAACAT
TATTTTATTTTATATTTTTCAATTACCTCTTACCAATATTATAAATCTCT
TNTNTNNCNNNNNTNNNNNNCNNNNNNNNNNNNNNNNNTNNNNNNNNNNN
NNNNNNNNNNNNNNNNTNNTTTTTTTTTTTNNTTNTTTTTTTTTTTTTNN
NTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_l01.b1 MSMg01no049_l01.b1 CHROMAT_FILE:
MSMg01no049_l01.b1 PHD_FILE: MSMg01no049_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:58 2005
         (130 letters)



>mm_chr4_4103659_4104189
          Length = 531

 Score =  213 bits (110), Expect = 4e-60
 Identities = 119/122 (97%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaatt-atccctgagacgaatgctttctttgtaatcacttcaagagctgtaggagaggag 68
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaattcatccctgagacgtatgctttctttgtaatcacttcaagagctgtaggagaggag 272

                                                                       
Query: 69  cttccccattctctaagatacaactgtttttcaccgtactctaagatatatgtcttttca 128
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 271 cttccccattctctaagatacaactgtttttcaccgtactctaagatacatgtcttttca 212

             
Query: 129 gt 130
           ||
Sbjct: 211 gt 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 531
Length adjustment: 8
Effective length of query: 122
Effective length of database: 523
Effective search space:    63806
Effective search space used:    63806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)