Query= MSMg01no050_h02.b1 MSMg01no050_h02.b1 CHROMAT_FILE:
MSMg01no050_h02.b1 PHD_FILE: MSMg01no050_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:45 2005
(215 letters)
>mm_chr4_78798560_78799174
Length = 615
Score = 393 bits (203), Expect = e-114
Identities = 212/215 (98%)
Strand = Plus / Minus
Query: 1 aaacaaaatttgtaagttacataaaaaataaaggagctcatcatttgacacacattttta 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 415 aaacaaaatttgtaagttacataaaaaataaaagagctcatcatttgacacacaatttta 356
Query: 61 ttcataagctattctataaaacttttgcttaattaacttgtcaaattggttccacaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttcataagctattctataaaacttttgcttaattaacttgtcaaattggttccacaaaaa 296
Query: 121 taagtagatggtagatcacatttgataatctaggcattgggcaagtgaggtagataactg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 295 taagtagatggtagatcacatttgaaaatctaggcattgggcaagtgaggtagataactg 236
Query: 181 gctcaggagttgacagtcatccttgactagcgtgt 215
|||||||||||||||||||||||||||||||||||
Sbjct: 235 gctcaggagttgacagtcatccttgactagcgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space: 124836
Effective search space used: 124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no050_h02.g1 MSMg01no050_h02.g1 CHROMAT_FILE:
MSMg01no050_h02.g1 PHD_FILE: MSMg01no050_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:45 2005
(714 letters)
>mm_chr4_78742623_78743735
Length = 1113
Score = 1236 bits (639), Expect = 0.0
Identities = 693/711 (97%), Gaps = 4/711 (0%)
Strand = Plus / Plus
Query: 6 tttgagtttcagacttggaatgtgtttttaaaaatcccaagcatttgaatttggaacctg 65
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 206 tttgagtttcagacttggaatgtgtttttaaaaatcagaagcatttgaatttggaacctg 265
Query: 66 aatgtatcttgcatgtgtgatcaacatgaaagagtgggtacaatgaatagtttgccttga 125
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatatatcttgcatgtgtgatcaacatgaaagagtgggtacaatgaatagtttgccttga 325
Query: 126 cttttaaaatttatgattacaaagttgtcatctg-acataattttgatgaatggtattgc 184
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 326 cttttaaaatttatgattacaaagttgtcat-tggacataattttgatgaatggtattgc 384
Query: 185 ttatcaatgtgacagaatctagaatcacttagattgcaatttcttagacagtggtctctt 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatcaacgtgacagaatctagaatcacttagattgcaatttcttagacagtggtctctt 444
Query: 245 catgctgacccagactaaatacttctctagacagcagcttttgaacatacatctccatca 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 catgctgacccagactaaatacttctctagatagcagcttttgaacatacatctccatca 504
Query: 305 tgatcattctcaatttagctaccttttcttacaaatatatttgtatgtttacacaggtga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 tgatcattctcaatttagctaccttttcttacaaatatatttgtatgtttaca-aggtga 563
Query: 365 agccttaagtaggtatgctcataatttctaggaaccttttctagtgtcctaaaacagata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agccttaagtaggtatgctcataatttctaggaaccttttctagtgtcctaaaacagata 623
Query: 425 caaaggttagtctctaacagtattgatttctttattaattacagatattttgtaattttc 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 caaaggttagtctctaacagtattgatttctttataaattacagatattttgtaattttc 683
Query: 485 attgtcctttagaaaattaaatttattttgatcaactttcgtttttgttttttgcttatt 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 684 attgtcctttagaaaattaaatttattttgatcaactttcatttttgttttttgcttatt 743
Query: 545 ctctgaattttgtttttattttttattagatattttctatacttacctttcaactttta- 603
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 744 ctctgaattttgtttttattttttattagatattttctatacttacatttcaaattttaa 803
Query: 604 tcccctttcctcatttccccttcaaaatacccccatcccatcccccctccacctgctcac 663
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct: 804 tcccctttcctcatttcccctccaaaatacccctatcccatccctcctccacctgctcac 863
Query: 664 taacccatccactcctgcttctctgtgctggcattcccctacactggggca 714
|||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 864 taacccattcactcctgcttccctgtgctggcattcccctacactggggca 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1113
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1103
Effective search space: 776512
Effective search space used: 776512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
