BAC Information

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BAC

Clone NameMSMg01-050H04
Chromosome4 (Build37)
Map Location 93,838,252 - 93,838,750
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050H04.T7 (MSMg01no050_h04.b1)MSMg01-050H04.TJ (MSMg01no050_h04.g1)
ACCAG279525AG279526
length1,2341,243
length of high quality
(start - end)
327 (118 - 444)499 (121 - 619)
definitionCHROMAT_FILE: MSMg01no050_h04.b1 PHD_FILE: MSMg01no050_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:46 2005CHROMAT_FILE: MSMg01no050_h04.g1 PHD_FILE: MSMg01no050_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCACTGCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCT
TTGTTTGGCTCTGTACCCCATTTTAATATGGTTATTTGGTTCTCTGAAGT
CTAGCTTCTTGAGATCTTTGTATTTATTGGATATTTGCCCTCAAACGGAT
GTAGGGTTCATGTTAATCTCCTCACAATCTCTAGGTTGCCATTTTGTCCT
ACTGAAAATGTCCTCTGCCTTACAGAAGCTTTTCAATTTTGGGTGGTCCC
ATTTGTTAATAGTTGATCTCAGAGCCTGAGCCATTGGTGTTTTCCCTTTC
CCTCTTTCTCTTCTATTAGATTCAGTGTATCTGGTTTTATGTGGAGGTCC
TTGATCTACTTGAACTTGAGCTTTGTACAAGCAGATAAGACTGGATTATT
TTGCATTTTTCTACATGCTGCCAGCCACTTGAATCAGTACCATCTGTTGA
ATCTGCTGCCTCTTTTCCACTGGATGGTTTTGGCTTCATAGGCAAAGTTC
AGGTGACCATAGGTATGTGCGTCCATTTCTGTGCCTTCAATTCTATTCCA
TTGATCTACCTTTCTGTCTCCGTACCAATACTATGCACGTGTTTTTTGTT
TTGCTTTGCTTTTACCCCTATTTCTCTGTAGTAAATCTTTAGGTCAGGGA
TGGTGATTCCCCCAGAAGTTCCAATATTGCCGAGAATAGTTTTCCTTATT
CTGGGTCTTTTTGTTATTCCAGATGAATTTGAAAATTGCTCTTTCCTATC
TCTGTGAAAAATCGAACTAAGGCATTTGATGCATACCGCATTGAATATGT
AAACTGCTTTTTGTCAATATGCTCCATTTTTACCGCCTATCCTGCTGATC
CCATAACCTTGGGCATATTTCTTATTTCTTTCTGAAGTCTTTAATCCAAT
TTCTCTTTTTTTTCATCTCCCAAATGCTTGTCAAAATAAACACAGTTTCT
CACAAACCCTATGGTTTCATGATTTTAACCCATAATTTTTTCCTCAATAG
TTCTGTAATTAATTTTTCCCACACCTCTTCTTTCAAATTTATAATCCACT
TCCTCCCCATTTATCTCTAATGGGTCTTTACTCCTCCTCTTCCCTAATAC
ATTTTATCCCCCTAAATTGGTTTCCCAATTTCAAGCTCAATATCTCGCTT
TCTCTCCTTATTCTATCTATCTATCTCTTTATACCAAACTCTTCTCCTTA
AAATATCTTTTCTTCTTCTAATTTATATCCTTCT
NTTAAACTATGGTAGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTACATGCCCAGTAATGCATTGACATCACTG
TATGGATCCTATTACACTACATTTTTCCTAAAAATTATAAAGGGGAAATA
CAGTTACTAAAAACAGCAGAACACCACAATCTATTTGAATAATGGTACTG
GCTTCTGTCTTGTCTTTGGATTAAAAGACAATTTAGAAGGACAAAAGGTG
ATGTCCATTTGAATCCTGATTTATTTTCATCCAGACAGTGTCCTACGATA
GAAAGGGAACATAGTCATTGGACTTTAAATCCTCATTATGGCATCCAGCA
GAAGTACACCACCTTGAGTAACTGACTTCATCTCTTAGAATTCAGATTAC
TCTCCTGTGGAAGCACCAGTATGTTCCCTACCTACTTTCTTATACACGCT
TGTGGGGAAGCAATGGGAATATATCACCAAAATGCCTCAGGCCTTCTTAG
CACAGCAAATGGTAGATATGAAAGATGTCAAGGACCCAAGCATTGTTCTT
CTCATCTACCTCCTCTTCCTGCTACTTTCCTGCCCTACCCTTGCTCTCCC
AACACTGCACCTAACTTCAAAAGCCAGCTAACAGCAGAGCTTCACCCCTA
CCAGTATGTCAATACTCCACTCCACAACCAATTCTACAATAGACAAGAGG
TTTTATTCCCCTCTACCTGGGTTCCAAAGTTGCCGTTGAGATAGCCCGTA
TACACCATACCTTTAATAAATATTTCTAGAGTCTGCTTACTCTCGGAAAT
ACCCACGGACTATAAGTTATAGAGCTCGGCAATTTTAAATCGTATTCCTT
TGAGGATCTCCTTTAACTCCCCAATTAAAATATATGGGTTAAATACATTG
AAAAACTTTCTCCCCCCCACCTTGGCCTGTTGGGCTGTGGGAATTGCAAT
CTTGTAATACCTATTCTGTAAAATCTATCTTGGCCGCTCCCTCATAACAA
ATGGGACACTATAACTACTGGAAGGACCTCCCCAAAACTCCCTCCTGGGC
CCACCCATCCAAAGCATTTCTTATTCCCCTTAAAAAAAAACCCATGCCTC
CCCTCTGGTTCCAAACCATCCCCTATATTTTTTAAAACCCCACAAACTCT
GGAATACAACACCTCTTTGTGCCTCTCTCACACAAAGTTTTCGTGTTCTC
TAGATAAGCGCTCTTANTNATTTATNTACCGTTGTATTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_h04.g1 MSMg01no050_h04.g1 CHROMAT_FILE:
MSMg01no050_h04.g1 PHD_FILE: MSMg01no050_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:46 2005
         (499 letters)



>mm_chr4_93838052_93838950
          Length = 899

 Score =  833 bits (431), Expect = 0.0
 Identities = 482/499 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttcctaaaaattataaaggggaaatacagttactaaaaacagcagaacaccacaat 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttcctaaaaaatataaaggggaaatacagttactaaaaacagcagaacaccacaat 260

                                                                       
Query: 61  ctatttgaataatggtactggcttctgtcttgtctttggattaaaagacaatttagaagg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctatttgaataatggtactggcttctgtcttgtctttcgattaaaagacaatttagaagg 320

                                                                       
Query: 121 acaaaaggtgatgtccatttgaatcctgatttattttcatccagacagtgtcctacgata 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 acaaaaggtgatgtccatttgaatcctgatttattttcatccagactgtgtcctacgata 380

                                                                       
Query: 181 gaaagggaacatagtcattggactttaaatcctcattatggcatccagcagaagtacacc 240
           ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||
Sbjct: 381 gaaagggaacagagtcattggactttaaatcctcattatggcattgagcagaagtatacc 440

                                                                       
Query: 241 accttgagtaactgacttcatctcttagaattcagattactctcctgtggaagcaccagt 300
           ||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 441 accttgagtaaatgacttcatctcttagaattcaggttactcacctgtggaaggaccagt 500

                                                                       
Query: 301 atgttccctacctactttcttatacacgcttgtggggaagcaatgggaatatatcaccaa 360
           ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 501 atgtttcctacctactttcttatacacgtttgtggggaagcaatgggaatatataaccaa 560

                                                                       
Query: 361 aatgcctcaggccttcttagcacagcaaatggtagatatgaaagatgtcaaggacccaag 420
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 561 aatgcctcaggccttcttagcacaggaaatggtagatatgaaagatgtcaaggaccaaag 620

                                                                       
Query: 421 cattgttcttctcatctacctcctcttcctgctactttcctgccctacccttgctctccc 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgttcttctcatctagctcctcttcctgctactttcctgccctacccttgctctccc 680

                              
Query: 481 aacactgcacctaacttca 499
           |||||||||||||||||||
Sbjct: 681 aacactgcacctaacttca 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)