Query= MSMg01no050_h21.b1 MSMg01no050_h21.b1 CHROMAT_FILE:
MSMg01no050_h21.b1 PHD_FILE: MSMg01no050_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:53 2005
(279 letters)
>mm_chr4_29606560_29607238
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 1 gtaaaccacctaatcttgatgatcttctagaatcctagactttttgctatgtatccattt 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 479 gtaaaccagctaatcttgatgatcttctagaatcctcgactttttgctatgtatccattt 420
Query: 61 ttcattaacctattaggcaaaatgataagtacaaggtggatctaagtaaaagatgtaaga 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttcatttacctattaggcaaaatgataagtacaaggtggatctaagtaaaagatgtaaga 360
Query: 121 agaactcctgtggggacaaaaatctgctcttcctttcttgccctgtatccagtggtgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agaactcctgtggggacaaaaatctgctcttcctttcttgccctgtatccagtggtgtgg 300
Query: 181 tctcagcagcctcatggatgctggcttccttttcagcacacccacacttttgcttcaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tctcagcagcctcatggatgctggcttccttttcagcacacccacacttttgcttcaata 240
Query: 241 tgtactgactcattacatctctaagctccttggattaga 279
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 tgtactgactcattacatctttaagctccttggattaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no050_h21.g1 MSMg01no050_h21.g1 CHROMAT_FILE:
MSMg01no050_h21.g1 PHD_FILE: MSMg01no050_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:53 2005
(387 letters)
>mm_chr4_29540429_29541214
Length = 786
Score = 665 bits (344), Expect = 0.0
Identities = 377/388 (97%), Gaps = 3/388 (0%)
Strand = Plus / Plus
Query: 1 agtagataaggaagtgaatcagtaaccaacaaatgtgatcttgtgagtccaacaagttac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagataaggaagtgaatcagtaaccaacaaatgtgatcttgtgagtccaacaagttat 260
Query: 61 tttacaacaaacaaacaaaaaaaattaaatgaagagaaaatccaaacaaatggccggaac 120
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 261 tttacaacaaacaaac-aaaaaaattaaatgaagaggaaatccaaacaaatggctggaac 319
Query: 121 tctccagctacagaaatgacatagtatgtggatctaaaatatataacaaaaatcatta-a 179
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 320 tctccagctacagaaatgacatagtatgtgaatctaaaatatataacaaaaatcattaga 379
Query: 180 aacaactcaattaaaattgactataaaagtgagcagagttttcttaaaaataattagtac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 aacaactcaattaaaattgactataaaagtgagcagagttttcttaaaaatagttagtac 439
Query: 240 aaatggccaggacaaacattataaaaaaaaaggtggatatccttcaccatttgggaaata 299
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 440 aaatggcaaggacaaacattat-aaaaaaaaggtggatatcctttaccatttgggaaata 498
Query: 300 aatacttcaaaaattttaatattcaaagtcaccatattcagaatggccatcatcagaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatacttcaaaaattttaatattcaaagtcaccatattcagaatggccatcatcagaaat 558
Query: 360 agtagttttggaatgggtatgaagaaat 387
||||||||| ||||||||||||||||||
Sbjct: 559 agtagttttagaatgggtatgaagaaat 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 786
Length adjustment: 9
Effective length of query: 378
Effective length of database: 777
Effective search space: 293706
Effective search space used: 293706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
