BAC Information

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BAC

Clone NameMSMg01-050I17
Chromosome4 (Build37)
Map Location 79,369,171 - 79,369,288
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050I17.T7 (MSMg01no050_i17.b1)MSMg01-050I17.TJ (MSMg01no050_i17.g1)
ACCAG279593AG279594
length1,2641,243
length of high quality
(start - end)
119 (128 - 246)49 (264 - 312)
definitionCHROMAT_FILE: MSMg01no050_i17.b1 PHD_FILE: MSMg01no050_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:00 2005CHROMAT_FILE: MSMg01no050_i17.g1 PHD_FILE: MSMg01no050_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTCTTGT
GGACTGGAACACCCTTAAAGGAAACAGAAGTCTTATCACTATATTATTCT
CACCCCTATTCTAGTAGAAATGACCTGACCTCTGTCTTAAACAACTACCC
TCTGTGTGTTAGTGTAATCACACCATTTGAGATGAGATTTATGAACTTAC
CCCTATGCCCTGTGTTCCTATAAGCAAGTGGCACTTCAGTATCAGCAAGT
GTGCTTGCTATACATTGCTTTGAGATAATATCTATGACAATCAATTTATG
AAGAAGAAATATTCAAGTCTAATTACAATTTTAATTCTAACTATCATACA
ATTTTATGCCTGTATCATGGACAGGTCAAAAATATGCTCAATTTATTTAT
TTAAGGGAATAAGTGTTTTGTAGAGGAGATAATGCCGAAGACTAAAACTT
GGTAGAAATAATCGTACTATTTCTAGAATATTGACCATTGGACTCCCGTT
TACACTTCCTACCATCTCACATTTTGTAGGTATTACATCATATACCATGA
CTATATCACAGCGAAACACTGGAAGTTTCCTATGGTACAAATTATAACAG
CAGATTTTATTACAAAAAAACGTAAAAAATTTGTACTCATTTCTGTCCAG
TGCCTGTGAGCTATGATTAAAGGACAGGAGTTATTTTCAGTGTCTGGCTT
GTCTATTTTATCATAACGTTTTCTAAATGAAAACCTTCCATGTTCTCTTA
TTATAAAGGCTTCTTCTTTCTTTTCTTACTTTTCCTCCCTTTCTTTCTTT
TCTTACTTACATTTAATCTCTTTTTTTTGCGCATTGTTTTTGCCCCAACT
CGATTTATATCTTGTATTGTTACCCTTCTTATGATTTTGTTGTCTAATAT
ATTTTGCCCTTATATTAAATTCTCTTCTCTATTGACCCTAGTATCTTTTT
ATTGCTTGTCCTGTTAATCTTTATTTGTAACTTTTCCTTAAACAAAATTT
CATTTTTGGAATTTAATTTTTTTATCCATTTTATAAATAAATTTTGTTTT
ATATTCTTCTTTTATCCTTATTATAAATGAATTTTTTGTCTACTGTTATG
TCCCATTTTTAATACTTTTTGGAAAACTGTGGTTCGTCTCCACTTTATAA
TAATTATCTTCTCTCTTTCCACTTTCTTTTCTCACTTCAAATGTTGGGAT
TATTTTTTAAATGGTGCCTCTTGGTGGTCAATTATATACCCATCTGTATT
ATATCTCTCTATTC
TCATGGTAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCCCCTTAACCTCTTATGGGNGAATAGAGCTTGAATATAT
AATCCCTTACATAGTCCACATTGTTCTTAATTTGTATATCTCTTGAAGGC
ATTCTAGGCTGGTTCTATAGGTTTGTTTTAAATAGCGTTATAATACCATC
GTAAAGCAAATTTATTGTTGGTAATTGACTTCAAATCCTTATAGGAACTG
ACCCAGAAGTAGTTATACATGAATCATATGTAATTCCTATTTTCAATTTT
TGAGGTATTATCATACTGATTTTATTAATAAACCTGAATAAAACTTAAAA
ATGGAAATGTTATGAATTTAGAAATATTAATGTATAAAAATAATTTTTTT
TTTCTGTTTTTATTAATTATTTTATCTATTTTTATGCCAAATGTTTCCCC
CCTCTCAGACCCACTCTCAGAATTCTTCTCTACTTCCCCCTCCTCATCAC
CTCTGATATGGTGCCCCTTGGTAGTATTCTCCTACTATTTGGCACCTCGA
CTGCAAGATTATCTACATCATTTCTCACTGATGTCCGACTAGGCATCCCT
CTGTTACATATGTGCTGGCTAGTTGCTGCTCAGAACAGCCTATCTTAAGC
TATTTGTTGATGGTTCAGTCTCTGGAACTACTCATGAGTCCATGTTGGTT
GATCAGTTTCTCTTTCTTTGGTTTTTGCATTCCCTTCATTTTCTTCTATT
TTTCCCTCTAACTTTTGCTTCTACTGTTCCTTCTTTCTCTTGTCTTATTT
CTTGATTGTGACTTTCTTGCTATTGCTTCCAGTCAAAAAATTTATTTTTT
TCTCTATTATTGTCTAAACATTTTAAATAAATTTCTATGATATATTTTTA
TTCGTTTTATCCAAATGTTTTTTTAATTTTTCCCTTTTGAATTTTCCCTT
TTATGATTTAATTAAACCCCTTTTTTTTTTTCTTTCGGGATATTTTTGAT
TGTCTTAAATGGGTTATTAAATTATATTCCTTCCCTAGTTAATTTTTTTT
TTATCCTTTTTTGGTTTTTATTCAATATTACATGGCTATCTCCTTATTTA
TACACTTTTTTTGGCTATATCCTATCTATAACAGATACTATTTGTTCCTT
TATTGAAATTTTTTTTTTATTTTATTTCACCATTTATTTATCATTCTTAG
TGTCTCTTCTATCTCTCGTTAATTTCAATTTTTCCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_i17.b1 MSMg01no050_i17.b1 CHROMAT_FILE:
MSMg01no050_i17.b1 PHD_FILE: MSMg01no050_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:00 2005
         (119 letters)



>mm_chr4_79368971_79369489
          Length = 519

 Score =  190 bits (98), Expect = 3e-53
 Identities = 113/118 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctctgtcttaaacaactaccctctgtgtgttagtgtaatcacaccatttgagatgaga 60
           ||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||
Sbjct: 318 acctctgtcttaaacaactatactgtgtgtgttagtgtaatcacaccatttgagatgaga 259

                                                                     
Query: 61  tttatgaacttacccctatgccctgtgttcctataagcaagtggcacttcagtatcag 118
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 tttatgaacttaccactatgccctgtgttcctgtaagcaagtggcacttcagtatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)