BAC Information

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BAC

Clone NameMSMg01-051I22
Chromosome4 (Build37)
Map Location 27,329,224 - 27,329,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051I22.T7 (MSMg01no051_i22.b1)MSMg01-051I22.TJ (MSMg01no051_i22.g1)
ACCAG280280AG280281
length1,4221,250
length of high quality
(start - end)
313 (30 - 342)268 (82 - 349)
definitionCHROMAT_FILE: MSMg01no051_i22.b1 PHD_FILE: MSMg01no051_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:26 2005CHROMAT_FILE: MSMg01no051_i22.g1 PHD_FILE: MSMg01no051_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTACACTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CTGTTATTTAAGTTTATATATTCATTTTATTTCATTTAGTAACTATTTAT
GTCAGCTTCTACACTTTAAGGATGTTTACCCCTATCATAAATGTTTCAAA
CTTTTTTGTATAATAATTTATATTCACAAAGCAACTGAGTAAACTGCAAA
AACTATCTGGTCCTGCTTCATTAAGATTCTCTCTCTGACTCTGTCCCTCT
CTCTATGCTTTTCTGTGTCTCTCTGTCTCCATTTCCATTTCTGTCTCTAT
CTCCCCACCCCCTCTTTCTTGTGTGTGTGTGTGTGTGTGCGTGCGTTTTT
TTTTTCTTCTTTCTTTTTTTTTTCTTCTTTCTCTCCTCTNCTCTTTTTTT
TTTTTTTTCTCTCTCTCTCTTTCTTTTTTTTCTTTTTTTTTTCTCCCCTT
TTTTTTTTCCCCCCCCCCTTTTTTGTTCTTTCCCCCTCTAAAAAAAAAAA
AGGGTTTTTTTCTTTTTTTTTTTCTTTCTTTATTCTTATTTTTTCTTTTT
TATCTTTTTTTTTCTCTTCCTTTCCTTTTATATTTTCTTTTTTCTTTTCT
TTTTTTTTCTTCTTCTTTTCTTTTATTCCTCTTCCTTTCTCTTCTTTTCT
CTTCTTTATTCCTTTTTTTCTTTTTCCTCTTTTCCTTTCTATTTTTTATT
CTCCCCTTCTTCTTTCTTTCTCCTTTTTCCTTCATTTATTATTTTTTTTA
TTCTTTCTTCCTTCTTTTTACCTTTTCTTTTTTTCACCTTTTTCTTTCCT
TCTTATTTTTATTCTCTATTCCTCTATTTTCTCTTTTTTTCTTCCTTCTT
TTTTTTTTCTTTTTTCATATCCTATCCTTTTCTCTTTTCTTCTTATTTCT
TTTTATTATCTTTTTCTTCTATTAATACTATTTTTACTTTTTCTTCTTTT
TTTTTTTTATTTCTTTCTTCTTTTCATCTTTTTCTTTTATTTTTTATTCT
TTTTTACTTTCTTTTTTTCTTTTCCTTCTATTTTTTTTTTTTCACTTTCT
CTTTCTTTTTCTTTCTTTTTTTCTTTATATCCGATTTATTTATATTCCTA
CACCCCTTCTAATTTTTTTTATTCTATATTCATTCCCCTTTTTTCATTTC
CCCTCTTCCTTTTTATTTTTTCACTCTTCCTTTATTTACTTATTTTCTTT
TCCCTATTTACTTCTTATCCTCCATCTTTCCTTTTTTCTTTCATCCACTC
CTTCCTCTTATTCCTTTTATCTTATTTCTTCTATTCTTCTTTATTATTCC
TCTCTCTTCCTATTCTTTTTTTCTTCTATCTATTTTATCTATTTCTCATC
TATCTTATTTTTCCTTTCTTAATATATTATATTTTTCTCTATCTTTTCCC
CCTCTTCTTTTCTTTTTTTATT
NCATGTTTTNNNNNTTTGCTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAACAAATGTTCAACATCCTTAATCCCCAAAGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGAGAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGAAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGCATTTTTTTTCCACTATGTTCATAGCAGCCTTATTTATAATA
GTCATAACCCGCCTTTTTCTCCCCACCCCCCTCATTAGATTTATTGCCTC
ACTAAAAAAGTGGTATATTTACTCCTATGTATTACTACTCATCTCTCATT
TTCAATCAATTTATGATCTTCCCTTCTAAATGTATGTATCTCGACTTCTT
CTTCCTTGTTTGATCTCTCCCTTCTTCTTTTTATTTTTTCTTTATTTGCT
TTCTTTTGATTTTCGTTTTCTCCTTTCTTTTTCTCTTTATTTTTATTTTT
TTTTTCTTCCTTTCTTTTTTTTCCTTCTTTCTTTTTTTCTTTTTTTTCTT
ATTTTTTTCTTTTATTTTCTATTTCCTTTTTTTCTTATTTCTTTCTTTTT
CCCTTTTTTCTTTTTTTTTTTTTCTTTTCCCCTTTTTTTTTTTTTCTTCT
TTTTCTTCCTTTCTTTCTTCTTTTTTCTTTTTCTTTTCTTCCTTTTTCTT
TTTTTTTTTCACTTTTCTCTATTTTCTCTTTTTTTTCTTTTTTCCTCCCT
TTTTTTTTTTTTTTTTTTTTTTTCTTTTATTTCTCTTTTTTCTTCTTTCC
TCCTTCCTTTTTTTCTTCTTCTCTTCTTCTCTATCTTCTCTTTTTTCTCT
TTACTTCTTTTTCTCTCTTCTCTCTCTTCTCCTTTCTTTATTCTTTTCTT
TCTTCTTTCATCTCCTTCTTTTTTTATCCTTTTTTCCTTTTTTCTTCTCT
CTTCTTCTTTTTCTTTCTCTCCTTCTTTTTTATTTTCTATCTTTATCTTT
TCCTTTCTTTTCTTTTCTTTTTTCCTTTTTTTTTTTTCCTCTCTCTTCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_i22.b1 MSMg01no051_i22.b1 CHROMAT_FILE:
MSMg01no051_i22.b1 PHD_FILE: MSMg01no051_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:26 2005
         (313 letters)



>mm_chr4_27329122_27329834
          Length = 713

 Score =  507 bits (262), Expect = e-148
 Identities = 287/300 (95%), Gaps = 10/300 (3%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctgttatttaagtttatatattcattttatttcatttagtaactatttatgtcag 76
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 398 gaattctgttatttaagtttatatattcattttatttcatttagtaaccatttatgtcag 339

                                                                       
Query: 77  cttctacactttaaggatgttta----cccctatcataaatgtttcaaacttttttgtat 132
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 338 cttctacactttaaggatgtttaattt----tatcataaatgtttcaaacttttttgtat 283

                                                                       
Query: 133 aataatttatattcacaaagcaactgagtaaactgcaaaaactatctggtcctgcttcat 192
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 282 aataatttatattcacaaagcaactgagtaaactgcaaaaactatctggtcctgtttcat 223

                                                                       
Query: 193 taagattctctctctgactctgtccctctctctatgcttttctgtgtctctctgtctcca 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 taagattctctctctgactctgtccctctctctatgcttttctgtgtctctctgtctcca 163

                                                                       
Query: 253 tttccatttctgtctctatctccccaccccctctttct--tgtgtgtgtgtgtgtgtgtg 310
           ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||
Sbjct: 162 tttccatttctgtctctatctccccaccccctctttctcctgtgtttgtgtgtgtgtgtg 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)