BAC Information

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BAC

Clone NameMSMg01-051K22
Chromosome4 (Build37)
Map Location 83,280,438 - 83,280,610
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051K22.T7 (MSMg01no051_k22.b1)MSMg01-051K22.TJ (MSMg01no051_k22.g1)
ACCAG280371AG280372
length1,3691,246
length of high quality
(start - end)
333 (44 - 376)182 (74 - 255)
definitionCHROMAT_FILE: MSMg01no051_k22.b1 PHD_FILE: MSMg01no051_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:42 2005CHROMAT_FILE: MSMg01no051_k22.g1 PHD_FILE: MSMg01no051_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTGCATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCTTTTTTTTAATGGGGTTATTTGATATTC
TGAAGTCCACTTTCTTGAGTTCTTTATATCCCCCGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTCTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATTT
TTTTTTATTTGACCTTAGCACAAGGAGATTTTTATGGATCTACTCCCTTT
TTTTTTTTCCCCCCCCCATCTAGTTTCTGTCACCTCCTTTTTGAATGAAG
ATGTTTGTCTTTCTTTCTTTTCGTACGTTTTTCTTTTTCTTTTGTTCTAT
CTATTTTGTTGTCTCTTTTGTGTTGTTCTCTTTATTTTCTTTTCTTTCTT
CTCTTCTTCTTCCTCTTTTCCTCTTCTCTTTTTTTGTTTTCTTTATCTCT
CTTTCTTTTTTTTTTTTTTTCTCTCTCTTTTATTTTTCTTTTTTTTTTTC
TTTTCCTTCTTCTTCTATTTTTTCTTTTTTTTTTTTTTCCTTCTTTTTCC
TTTTCTTTTTTCCCTTTCCTTTTTCTTTTTTCTTTCTTTTTTTCTTTTTA
CATCTCTTTTTTTTTTCCTTTTCCTTTTTCTTTTTTTCGCTCTTTTCTTT
TCTTTTTTTCTTTTTTTTTTCTCTTCTCTTTTTTTTTCTTCTTTTCTCTT
ATTATTCTTTTTCCTTTTTTCTATTTTTCTTTCTCTTTTTCATCTTTTTC
TTCTTTTCTCTTTTTTTTTTATTTTTTTTTCTCTTCTCCTTCTCTTTTTT
GTCTTCTCTTTTTTTTTTTTTTCATTTTATCTTTTTTTTTTCCTTTTTTT
TTTTTTCTCCCCCCTCTTTTTTTTTTTACTTCTCTTTTCTCTCTTTCTTT
TTCCCTTTTTTCTCTCTTCCTTCTCTTTTTTTGTCCTCTCTCTTCTTCTT
TATCTCTTTTCTTTCCTTTTTTCCTCTTTTTTTCCTTTTTTCTTTTTTTG
TTTTACTCTGTCTTTTTCTTTTTTTCCCTTTACTTTTCTCTCATTTATTC
TCTTCTTTTTTTGTCTTTTTTCTTCATTCTTTTATATTATTCTTTGTTTT
CTCTTTTTTCAATTTTTCTCTTGTTCTTTTCTGTTCTTTTTTCTCCCCTG
TCTTTCTTTCTTTGTTTTC
NTTTTCAGCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTACTCTCCCTGCCAACTCTGAGCAG
GTATGCAAGCCCACAAGCAAGAAAGGCAGAGCACCAGCAGCCTCGGTGGC
CTCGGTCATTCCCACCCAGCGCCGAGATCCACCCAGTTCCTGTAGTTGAA
TCCTTAGTCTTCATCTTGATTCCTCCTTTTATTTGGGTGTGTGTGAGTGT
GNGTGTNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTCTTCTT
TTTTTTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTNTTTT
CTTTTTTTCTTTTCTTTTTTCTTCTTTTTTTTTTTTTCTTCTTTTTTTCC
CTCTCTTTTTTTTTTCCCCCCCCCCCTTTTTTTTTTCTTTCTTTCTCTAT
ATTATAGTTGTTTTTTTTTCTTCTTTTTTTTTTTTCTTTTTCTTCTATCT
TCTTTTCTTTTTTTTTTCTCTTCTTCTTTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTCTTTTTTTTTTTCCTCTTCTTTCTTTCTTTTTTCTTCTTCTTT
TTTTCCTTCTTTTTTTCTTTTTTTTTTTCTCCTTTTTTTTTTTTCTCTCT
TTTTTTTTTTTTTATTTTTCCTTTTTTTTCTTTTCTTTTCTTTTTTTTTT
CTTTTTTTTTCCTCTTTCTTTCTTCTTTTTTTTTTTTTTTTCTTTTTTTT
CTTTTTTTTTTCTTTTTCCTTTTTTTTTTTTTTTTTTTCTTTTTTTTCTT
TTTACTTTTTTTTTTTTTCTTTTTTTTCTTTCTTTTTTCTTTTTTTCTCT
TTCTTTTTCTTTCCTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTCT
TCTTTTTTTTCTTTTCCCTCCTCTTTTTTTTTTTCTTTTTTCTTTTTTCT
TTTTTATTCTTTTTTCTTTTTCATTTCTTCCCTTTCTTTTTTCTTCTTTT
CTTTTTTTTTTTTTTTCTCTTTTTTTTTCTTTTCTCTTTTTTCCTTTTTT
TTTCTTCTTTTTCTTTTTTTTTTTTTTTTTCCTTTCTTTCTTTCTCTTCT
TTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTCTTTTTTCTTTT
TTCATTTTTCTTTTCTTCCTCTCTTCTATTTTCTTCTTTCTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_k22.g1 MSMg01no051_k22.g1 CHROMAT_FILE:
MSMg01no051_k22.g1 PHD_FILE: MSMg01no051_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:43 2005
         (182 letters)



>mm_chr4_83280238_83280818
          Length = 581

 Score =  271 bits (140), Expect = 2e-77
 Identities = 167/178 (93%), Gaps = 5/178 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactctccctgccaactctgagcaggtatgcaagcccacaagcaagaaaggcagagca 60
           |||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||| |
Sbjct: 201 tttactctccctgccaactctgagcaggcacgcaagcaaacaagcaagaaaggcagagaa 260

                                                                       
Query: 61  ccagcagcctcggtggcctcggtcattcccacccagcgccgagatccacccagttcctgt 120
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 c-agcagcctcggtggcctcggtcattcccacccagcaccgagatccacccagttcctgt 319

                                                                     
Query: 121 agttgaatccttagtcttcatcttgattcctccttttatttgggtgtgtgtgagtgtg 178
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 320 agttgaatccttagtcttcatcttgattcctccttttatttg----tgtgtgagtgtg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space:    99702
Effective search space used:    99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)