Query= MSMg01no052_h24.b1 MSMg01no052_h24.b1 CHROMAT_FILE:
MSMg01no052_h24.b1 PHD_FILE: MSMg01no052_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(595 letters)
>mm_chr4_75244237_75245234
Length = 998
Score = 1098 bits (568), Expect = 0.0
Identities = 590/598 (98%), Gaps = 3/598 (0%)
Strand = Plus / Plus
Query: 1 aaaaattattttgttctgctaataactgctattggctctattcagtaaaggccccatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaattattttgttctgctaataactgctattggctctattcagtaaaggccccatttc 260
Query: 61 tgttgagtagattttcaataatattaaatatgattttaattattttcctctttcaattag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgagtagattctcaataatattaaatatgattttaattattttcctctttcaattag 320
Query: 121 aattgtctcatatgcatttctaagactatgccttgttgttctgacact--ataatttgta 178
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aattgtctcatttgcatttctaagactatgccttgttgttctgacactttataatttgta 380
Query: 179 gtctagggacatttttctttctctttcctttctacatcttctgcctacaatcagtacagg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctagggacatttttctttctctttcctttctacatcttctgcctacaatcagtacagg 440
Query: 239 caaatatactaggttttctgttgcctgcttaggtcagcattgcttaacaagagagttaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatatactaggttttctgttgcctgcttaggtcagcattgcttaacaagagagttaaa 500
Query: 299 ggacatgtcctttattaacttgactaccaatttgaaaggtaactaaaaatgtgtttctat 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ggacatgtcctttattaacttgactaccaatttgaaaggcaactaaaaatgtgtttctat 560
Query: 359 aatgtaaaggttacagtgctaaaaacaacccttcttctcttgtaggcagaatgtccaaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtaaaggttacagtgctaaaaacaacccttcttctcttgtaggcagaatgtccaaac 620
Query: 419 aaccaaattt-atgtagtaagaaggataaatttattatatgactaccaagaacactttac 477
|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aaccaaattttaggtagtaagaaggataaatttattgtatgactaccaagaacactttac 680
Query: 478 ttttgtaataaaagtaacaactttgtttgctccatcattctatttccttcttccttaact 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtaataaaagtaacaactttgtttgctccatcattctatttccttcttccttaact 740
Query: 538 ggatactagataccaagattctggaaatccattagggaaacactaagaaaaccatgga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggatactagataccaagattctggaaatccattagggaaacactaagaaaaccatgga 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 998
Length adjustment: 10
Effective length of query: 585
Effective length of database: 988
Effective search space: 577980
Effective search space used: 577980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_h24.g1 MSMg01no052_h24.g1 CHROMAT_FILE:
MSMg01no052_h24.g1 PHD_FILE: MSMg01no052_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(616 letters)
>mm_chr4_75313500_75314515
Length = 1016
Score = 677 bits (350), Expect = 0.0
Identities = 359/362 (99%)
Strand = Plus / Minus
Query: 255 tgaatgtatgacatctttagcaataggatctcagcatcctgtgctgttcaacagaactca 314
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 862 tgaatgtatgacatctttagcaataggatctcaacatcctgtgctgttcaacagaactca 803
Query: 315 tgtgcctctctgaataataactactaaggaggtatcacatgccttatatgaaatctttat 374
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 802 tgtgcctctctgaataataactactaaggaggtattacatgccttatatgaaatctttat 743
Query: 375 gtagttaccatattccctaggaatagcattgcttgtatggtgctatgcaggtatgattaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtagttaccatattccctaggaatagcattgcttgtatggtgctatgcaggtatgattaa 683
Query: 435 tttagctcctgtttcttaaaattatattttgagatcattaccaactagtgggtttcccta 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttagctcctgtttcttaaaattatattttgagatcattaccaactagtgggtttcccta 623
Query: 495 agactttttgacatattcttagttttgttagccccttcccccaacttttccccataatat 554
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 agactttttgacatattcttagttttgttagccccttccccccacttttccccataatat 563
Query: 555 catgcctccacatctccacttaaatcatctcccttcttttataccacatgtctcctacta 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 catgcctccacatctccacttaaatcatctcccttcttttataccacatgtctcctacta 503
Query: 615 tt 616
||
Sbjct: 502 tt 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
