Query= MSMg01no052_k02.b1 MSMg01no052_k02.b1 CHROMAT_FILE:
MSMg01no052_k02.b1 PHD_FILE: MSMg01no052_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:18 2005
(616 letters)
>mm_chr4_118855459_118856474
Length = 1016
Score = 1189 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Minus
Query: 1 agatctgaaccaaccctggcagctttctaattaactaagaaattagagctttctaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agatctgaaccaaccctggcagctttctaattaactaagaaattagagctttctaatcag 756
Query: 61 gaaatccaattatattcatttggataaaaccctcatttaaaatggttgcatttctcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaaatccaattatattcatttggataaaaccctcatttaaaatggttgcatttctcagga 696
Query: 121 tcttaattgcaaaggatttggaaagttacataacccaacacttcctcctccatctgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tcttaattgcaaaggatttggaaagttacataacccaacacttcctcctccatctgaggg 636
Query: 181 tgtgaagactgtgatcttttcaaatggccatacacctatattggcggaggggtcagtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgtgaagactgtgatcttttcaaatggccatacacctatattggcggaggggtcagtcct 576
Query: 241 attcagacagctcagaccatgtttgggcagcagcatggaggaaaaggcgcttcctcagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 attcagacagctcagaccatgtttgggcagcagcatggaggaaaaggcgcttcctcagct 516
Query: 301 gagctcactctctcctctctccccttccagagaagctgctgtatgagcaagcgatggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gagctcactctctcctctctccccttccagagaagctgctgtatgagcaagcgatggagg 456
Query: 361 taggtgagtgccctgggcaggggtcaggggcatgcttttgttttgttgatttctgtatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taggtgagtgccctgggcaggggtcaggggcatgcttttgttttgttgatttctgtatca 396
Query: 421 ccagtgcccacagaactaaactttgtccctgaaagtttcatcaacctctgtttgtgttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccagtgcccacagaactaaactttgtccctgaaagtttcatcaacctctgtttgtgttga 336
Query: 481 tggaggaacccagtcttttctcctaaaagagatggcaaagcagtcaatggggacatcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tggaggaacccagtcttttctcctaaaagagatggcaaagcagtcaatggggacatcctg 276
Query: 541 ctcagaatcatgctttgacgtgtgctcttcagctactgtgttgtgaagagatcagaggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctcagaatcatgctttgacgtgtgctcttcagctactgtgttgtgaagagatcagaggag 216
Query: 601 taagacaagacatgg 615
|||||||||||||||
Sbjct: 215 taagacaagacatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k02.g1 MSMg01no052_k02.g1 CHROMAT_FILE:
MSMg01no052_k02.g1 PHD_FILE: MSMg01no052_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:18 2005
(587 letters)
>mm_chr4_118690994_118691978
Length = 985
Score = 1077 bits (557), Expect = 0.0
Identities = 579/589 (98%), Gaps = 6/589 (1%)
Strand = Plus / Plus
Query: 1 cagaagcttcaacacaggaggggctccagagaacattcttgaattttctcggcccctatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagcttcaacacaggaggggctccagagaacattcttgaattttctcggcccctatc 260
Query: 61 atcacaaattccaggctggggcaaaggcgagggcataagtcctgctgaagccatccaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcacaaattccaggctggggcaaaggcgagggcataagtcctgctgaagccatccaccc 320
Query: 121 gcagctgctgaggagggctgtctcttacttatctggaggcagcagactgtcatgagatct 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gcagctgctgaggagggctgtctctta----tctggaggcagcagactgtcatgagatct 376
Query: 181 tgaattctctagatagcagaagcttagggacccgagaccctacaaagtgacacatgactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgaattctctagatagcagaagcttagggacccgagaccctacaaagtgacacatgactg 436
Query: 241 ctccaggaagggctctggtctgacctttgtgtcaacaacaacaagaaggagaacagtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctccaggaagggctctggtctgacctttgtgtcaacaacaacaagaaggagaacagtgca 496
Query: 301 ccctgacacggacactttgtactgggtactttacctctgtaaggtcgttagcttttgtgt 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 ccctgacacggacactttgtactgggtactttacccctgtaaggtcgttagcttttgtgt 556
Query: 361 caagag--cttgctaagagcatcaccattttgctggtaagagagccaaggctcaagacat 418
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caagagagcttgctaagagcatcaccattttgctggtaagagagccaaggctcaagacat 616
Query: 419 taaggatcttctcaaagccagcccaagcctgatggtggcaatagccatccaccttctgct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taaggatcttctcaaagccagcccaagcctgatggtggcaatagccatccaccttctgct 676
Query: 479 ctgtgtcggcccctctttagtcacctggtgccctgactcacccatccctcatggcagccc 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgtgtcagcccctctttagtcacctggtgccctgactcacccatccctcatggcagccc 736
Query: 539 gggggcagcatagccacttacagaggacccgagatgcagctgtacaata 587
||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 737 gggggcagcatagccacttacagaggacccgagatgcggctatacaata 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 985
Length adjustment: 10
Effective length of query: 577
Effective length of database: 975
Effective search space: 562575
Effective search space used: 562575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
