Query= MSMg01no052_m08.b1 MSMg01no052_m08.b1 CHROMAT_FILE:
MSMg01no052_m08.b1 PHD_FILE: MSMg01no052_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
(677 letters)
>mm_chr4_38725156_38726233
Length = 1078
Score = 1218 bits (630), Expect = 0.0
Identities = 657/666 (98%), Gaps = 1/666 (0%)
Strand = Plus / Plus
Query: 13 gaattcttatatgtttccacaccaaggtgcaaggaagatcctggatgagttgaaatgtca 72
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttatatgttttcacaccaaggcgcaaggaagatcctggatgagttgaaatgtca 272
Query: 73 attcagttggggaaagtgatggaaaag-ataattactgaaatttcacatagcaaaaactg 131
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 273 attcagttggggaaagtgatggaaaagtataattactgaaatttcacatagcaaaaactg 332
Query: 132 agctgcaggttttacatacagcccttatttaaaattgatagcagccaagagaaacttttg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agctgcaggttttacatacagcccttatttaaaattgatagcagccaagagaaacttttg 392
Query: 192 catttttaaaatgactttaattggctcctttcacaccaggaagtcaatgtttgttaaatt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catttttaaaatgactttaattggctcctttcacaccaggaagtcaatgtttgttaaatt 452
Query: 252 attaagaaaagacatcatataatgatacgggtcaagttctattataaaatatctttacaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attaagaaaagacatcatataatgatacgggtcaagttctattataaaatatctttacaa 512
Query: 312 tgagaagttcagtacagccagtgtattttgaaagtacaaatttaatgagtgataattcat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgagaagttcagtacagccagtgtattttgaaagtacaaatttaatgagtgataattcat 572
Query: 372 tgggtggtcttaaaataataaaaacaagaaatagatatttcagcatagcaaagactttct 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgggtggtcttaaaataataaaaacaagaaatagatatttcagcatagcaaagactttct 632
Query: 432 taacagcctactaaaaaatctcacctttccttattttcatttcttttattaacctctatt 491
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tagcagcctactaaaaattctcacctttccttattttcatttcttttattaacctctatt 692
Query: 492 catatacacaagtgtaatgtggcaaatgatccttaaatagaactcacttcagaaaaaaat 551
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 693 catatacacaagtgtaatgtggaaaatgatccttaaatagaactcacttcagaaaaaaat 752
Query: 552 catattctcttattgtttcattaactaaataatgttttctggtggtaactcagtgacatc 611
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 753 catattctcttattgtttcattaactaaatcatgttttctggtggtaactcagtgacatc 812
Query: 612 acctctccaatttcacaggaagaaaacccacagccaaagaacttggtcctttctccgtgg 671
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 813 acctctccaatttcacaggaagaaaacccacagccgaagaactcggtcctttctccgtgg 872
Query: 672 cttgag 677
||||||
Sbjct: 873 cttgag 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space: 712356
Effective search space used: 712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_m08.g1 MSMg01no052_m08.g1 CHROMAT_FILE:
MSMg01no052_m08.g1 PHD_FILE: MSMg01no052_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
(625 letters)
>mm_chr4_38826646_38827670
Length = 1025
Score = 774 bits (400), Expect = 0.0
Identities = 433/444 (97%)
Strand = Plus / Minus
Query: 179 gtcatgagtgtgacccaggaaggatacacaacgaataatccctaaaatggtgagacagaa 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 gtcatgagtgtgacccaggagggatacacaacgaataatccctaaaatggtgagacagaa 966
Query: 239 agttattcagtagctgctaaacaattagtatcaaccagattggttcaatggtattttcag 298
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 965 agttattcagtagctgctaaacaattagaatcatccagattggttcaatggtattttcag 906
Query: 299 aaacaatatgcacaacctctttatgtttctggctacctttcacagtaatcttccttttgg 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 905 aaacaatatgcacaacctctttatgtttctggctaccttttacagtaatcttccttttgg 846
Query: 359 tcatggagaaaatcagtgtagggtgtaagccgtagtgaaggagaaaggcataagagaatt 418
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct: 845 tcatggagaaaatcagtgtatggtgtaagccatagtgaaggagaaaggcataagggaatt 786
Query: 419 ttaggggattaaatcagcctttggcagcctgatagagcaattttctaaccctattacgat 478
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 785 ttaggggattaaatcagcctttggcagcctgatagagcagttctctaaccctattacgat 726
Query: 479 aggctattggttagaggaagagatctcttgaatgttaaacatccattatgtaagaactac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 aggctattggttagaggaagagatctcttgaatgttaaacatccattatgtaagagctac 666
Query: 539 cccagacagttacagataggaacagatagaggatgagagagcaagtttagatattaaatc 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cccagactgttacagataggaacagatagaggatgagagagcaagtttagatattaaatc 606
Query: 599 agcattttgagccagtttgaaaag 622
||||||||||||||||||||||||
Sbjct: 605 agcattttgagccagtttgaaaag 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
