Query= MSMg01no052_n02.b1 MSMg01no052_n02.b1 CHROMAT_FILE:
MSMg01no052_n02.b1 PHD_FILE: MSMg01no052_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:32 2005
(555 letters)
>mm_chr4_18500426_18501382
Length = 957
Score = 665 bits (344), Expect = 0.0
Identities = 383/398 (96%), Gaps = 8/398 (2%)
Strand = Plus / Minus
Query: 4 gaattcataaacttttc---caatttgaacattttaaaaaa-aactagcaatgtcttcta 59
|||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct: 394 gaattcataaac--ttcatacaatttgaacgttttaaaaaacaactagcaatgtcttcta 337
Query: 60 atactgtatataagatgttgtttggaagtttaaaatcattttagattcaaatagtggaat 119
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atgctgtatataggatgttgtttggaagtttaaaatcattttagattcaaatagtggaat 277
Query: 120 tgttttgttccaaaattaaattcagtcattttctactttgccctaaaaaggacacaccat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgttttgttccaaaattaaattcagtcattttctactttgccctaaaaaggacacaccat 217
Query: 180 gttacattctttctttctttttttattagatattttctttatttacatttcaaatcttat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 216 gttacattctttctttctttttttattagatattttctttatttacatttcaaatgttat 157
Query: 240 cccctttcctagtttcctctctgaagatcccttataccttccccccctccttgctgctcc 299
|||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||
Sbjct: 156 cccctttcctagtttcctctctgaagattccttataccttcccccc-tccct-ctgctcc 99
Query: 300 ccaacccacccattccctcttcctggcctgtgcattcccctatattggggcatagaatct 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ccaacccacccactccctcttcctggcctgtgcattcccctatattggggcatagaatct 39
Query: 360 tcacaagaccaatggcctctcatcccactgatgaccaa 397
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 tcacaagaccaatggcctctcatcccactgatgaccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space: 516115
Effective search space used: 516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_n02.g1 MSMg01no052_n02.g1 CHROMAT_FILE:
MSMg01no052_n02.g1 PHD_FILE: MSMg01no052_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:33 2005
(448 letters)
>mm_chr4_18391937_18392785
Length = 849
Score = 835 bits (432), Expect = 0.0
Identities = 445/450 (98%), Gaps = 3/450 (0%)
Strand = Plus / Plus
Query: 1 tcacatctctcttctttcaaatttcagggaggttagttaaaattgtttttt--ccccctt 58
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcacatctctcttctttcaaatttcagggaggttagttaaaattgtttttttcccccctt 260
Query: 59 tcctttctttttttccatctttgtgaaggcatttgtgaaaagtccatgtttatatggggg 118
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tcctttcttttttt-catctttgtgaaggcatttgtgaaaagtccatgtttatatgggag 319
Query: 119 aattattaagccataattgtgagactgggaaggtaaggttatgtattaaactgaaaaaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattattaagccataattgtgagactgggaaggtaaggttatgtattaaactgaaaaaaa 379
Query: 179 tatctcatatttaatgcaacaggattaaaaactatttctctactggaaacaattcacttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatctcatatttaatgcaacaggattaaaaactatttctctactggaaacaattcacttc 439
Query: 239 ccgacatttccataacacttcccaactgttacaaaaatgacttgaatggagaacttgagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccgacatttccataacacttcccaactgttacaaaaatgacttgaatggagaacttgagc 499
Query: 299 atatcatcaagttgctgaaaaataaggatgagcattgttcatattttcatataatacttc 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttcatcaagttgctgaaaaataaggatgagcattgttcatattttcatataatacttc 559
Query: 359 ataaattaggtatcttagcaaagttcttttagacacctattttggggattctcattcatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataaattaggtatcttagcaaagttcttttagacacctattttggggattctcattcatt 619
Query: 419 ttttaatatgttattatcttcaaattagca 448
||||||||||||||||||||||||||||||
Sbjct: 620 ttttaatatgttattatcttcaaattagca 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 849
Length adjustment: 10
Effective length of query: 438
Effective length of database: 839
Effective search space: 367482
Effective search space used: 367482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
