BAC Information

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BAC

Clone NameMSMg01-052N19
Chromosome4 (Build37)
Map Location 106,983,410 - 107,134,848
singlet/doubletdoublet
Overlap geneYipf1, LOC652920, Tmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052N19.T7 (MSMg01no052_n19.b1)MSMg01-052N19.TJ (MSMg01no052_n19.g1)
ACCAG281236AG281237
length700699
length of high quality
(start - end)		498 (65 - 562)237 (74 - 310)
definitionCHROMAT_FILE: MSMg01no052_n19.b1 PHD_FILE: MSMg01no052_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:36 2005CHROMAT_FILE: MSMg01no052_n19.g1 PHD_FILE: MSMg01no052_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,983,410 - 106,983,905)(107,134,616 - 107,134,848)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAATTCCA
GGCTTCTCCCACACTTGTGCTGGGGATTAAGCCTAGGACTTTTACATGCT
AGGCAAGCACTTTACTAACTGAGCTGTATGCCCAGCCTCTGTTTGACATT
TTCTGTTAAATTAGCATAATACAGACTAGCTGGAAAAGGCAGGGAACGCT
AAGTCAAAGTCTAGAGAAATGTCACATCTGCTGACATCTGAGTACTACAA
CATGTCACGTTCCCTCTGTCTGAACGTAAGAGACACTTGCCCACTGGAGC
TCATCTCCCTTAGTCAGAGTCTCCCAGAGAGGCTTTGACGGACACTCCTG
CAATCGCAATGCTTTGGAAGCTGAATCTGGAAGATTACAACTTTGAGGCT
AGCCTGGGCTATATAGTGAGACCTTGTTTGTCCTTAAGCTGTTAACTCCA
TCACATTCTGAACATATATAAAGCAGTGAGGGGCCCTCTGGGAGAGCCCT
GAGGCAGAGTCCTGTCAGACGGTGCATGTGAGGAGCTTATCTCAGCCTAC
ACAAGTCCTAGCAGAAGCGTCTAGAAGGCAAGGGTTGGAGGCCAGAAGAT
AAGAAGTTTCACTTGAGGGGCTGGCTAGATGGCTCAACGGGAAAAGCACT
GACTGCTCTTCACCTCAGAGACTCTCCTTTCTCTTTCCTGCATTTTCCTG


TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCCCCCAGAATTTGCCCAAAGGGG
CACCGGGTGCACGGCCACAGGAAGGAGGTACCATGCTACATGGGGCTGTT
CCGAGGCTGTGCTCACCCCGGGGCAGATGAGCAGATCCTAACGTGGTGTC
TGTGTCAATCCAGAACCTTCCATCCAACTTCGTCTTATTTCCATCGCAGC
TGTTTATCACAACAGGACACAAATCCCAGGGGGAAGAGATGCCACCTGCC
TAGGGAACCCATCCTTAAGTGGTAAAGCCCGCAGGGGGCAGGCTGACTCC
ACAGCCACTGCCTACCACCTCACAGACACCTCACTCAATCTATGCTGGTT
TCTTTACAAACTGAATGCCCAGCATCCAGGAAAATGGCTGGTGAGAGAAG
ATGAAGGCCCTTCCACAGTTTCCAAAGCAAGGTCTTCCTCTTCGAGGCTG
AGGTAGGAGGACTCCTACCCTTCTCCATCACCCTCTGCTCCCACACAGCA
GCCCCCAAGCTGCCAATAACCAAAACGGGAACTGTAAGAATGAAAACACT
CCAGTAGCTCGTATGCCTCTTGCAACAGCCATCCATGGGAACCCATGGTG
AGGTCTATGGCCTACGAGGCCCATATCAGCCCTGGGGTCAGTGCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_n19.b1 MSMg01no052_n19.b1 CHROMAT_FILE:
MSMg01no052_n19.b1 PHD_FILE: MSMg01no052_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
         (498 letters)



>mm_chr4_106983208_106984105
          Length = 898

 Score =  944 bits (488), Expect = 0.0
 Identities = 494/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtgctggggattaagcctaggacttttacatgctaggcaagcactttactaactgagctg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgctggggattaagcctaggacttttacatgctaggcaagcactttactaactgagctg 262

                                                                       
Query: 63  tatgcccagcctctgtttgacattttctgttaaattagcataatacagactagctggaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatgcccagcctctgtttgacattttctgttaaattagcataatacagactagctggaaa 322

                                                                       
Query: 123 aggcagggaacgctaagtcaaagtctagagaaatgtcacatctgctgacatctgagtact 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggcagggaacgctaagtcaaagtctagagaaatgtcacatctgctgacatctgagtact 382

                                                                       
Query: 183 acaacatgtcacgttccctctgtctgaacgtaagagacacttgcccactggagctcatct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaacatgtcacgttccctctgtctgaacgtaagagacacttgcccactggagctcatct 442

                                                                       
Query: 243 cccttagtcagagtctcccagagaggctttgacggacactcctgcaatcgcaatgctttg 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 cccttagtcagagtctcccagagaggctttgacggacactcctgcaattgcaatgctttg 502

                                                                       
Query: 303 gaagctgaatctggaagattacaactttgaggctagcctgggctatatagtgagaccttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaagctgaatctggaagattacaactttgaggctagcctgggctatatagtgagaccttg 562

                                                                       
Query: 363 tttgtccttaagctgttaactccatcacattctgaacatatataaagcagtgaggggccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgtccttaagctgttaactccatcacattctgaacatatataaagcagtgaggggccc 622

                                                                       
Query: 423 tctgggagagccctgaggcagagtcctgtcagacggtgcatgtgaggagcttatctcagc 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 tctgggagagccctgaggcagagtcctgtcagacggtgcatgtgaggagcttgtctcagc 682

                           
Query: 483 ctacacaagtcctagc 498
           ||||||||||||||||
Sbjct: 683 ctacacaagtcctagc 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_n19.g1 MSMg01no052_n19.g1 CHROMAT_FILE:
MSMg01no052_n19.g1 PHD_FILE: MSMg01no052_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
         (237 letters)



>mm_chr4_107134416_107135048
          Length = 633

 Score =  377 bits (195), Expect = e-109
 Identities = 226/237 (95%), Gaps = 4/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcccccagaatttgcccaaaggggcaccgggtgcacggccacaggaaggaggtacca 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||  | ||
Sbjct: 433 acagcccccagaatttgcccaaaggggcaccgggtgcacggggacaggaaggag--a-ca 377

                                                                       
Query: 61  tgctacatggggctgttccgaggctgtgctcaccccggggcagatgagcagatcctaacg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 376 tgctacatgggtctgttccgaggctgtgctcaccccggggcagatgagcagatcctaaca 317

                                                                       
Query: 121 tggtgtctgtgtcaatccagaaccttccatccaacttcgtcttatttccatcgcagctgt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 316 tggtgtctgtgtcaatccagaaccttccatccaactgcgtcttatttccatcgcagctgt 257

                                                                    
Query: 181 ttatcacaacaggacacaaatcccagggggaagagatgccacctgcctagggaaccc 237
           ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 256 ttatcgcaacaggacacaaatcccaggggga-gaggtgccacctgcctagggaaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 633
Length adjustment: 9
Effective length of query: 228
Effective length of database: 624
Effective search space:   142272
Effective search space used:   142272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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