Query= MSMg01no052_n21.b1 MSMg01no052_n21.b1 CHROMAT_FILE:
MSMg01no052_n21.b1 PHD_FILE: MSMg01no052_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
(598 letters)
>mm_chr4_148696095_148697092
Length = 998
Score = 1042 bits (539), Expect = 0.0
Identities = 570/593 (96%), Gaps = 20/593 (3%)
Strand = Plus / Plus
Query: 6 gaattcaagaccagtctgcgctacatggcaaattatagactggccatggctacataatga 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaattcaagaccagtctgggctacatggcaaattatagactggccatggctacataatga 285
Query: 66 ctccatatatcttaacaaacaaaccaacaaacaaacaggtaaacagagactaggtaaaca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctccatatatcttaacaaacaaaccaacaaacaaacaggtaaacagagactaggtaaaca 345
Query: 126 gagaagtactgataaacaaccatctctgtctgtcttgtgtctgatcaacatacacacaca 185
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gagaagtactgataaacaaccatctctgtctgtcttgtgtctgatcaacat--------- 396
Query: 186 cacacacacacacacacacacacacacacacacacacacacaccccttcaccaagagtct 245
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 -----------acacacacacacacacacacacacacacacaccccttcaccaagagtct 445
Query: 246 taagctatcgcaatgccgaagagcctctaacctcccacagtgcactgtgccttccacttc 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 taagctatcgcaatgccgaagagcctctaacctcccacaatgcactgtgccttccacttc 505
Query: 306 ctccccttccctcagtggccaacatgcttagctttcaacaaaacagcatgaataatttaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctccccttccctcagtggccaacatgcttagctttcaacaaaacagcatgaataatttaa 565
Query: 366 accactacaaagcgatacacgatacaaaaggtcagaagatttagagactctgctggaaac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 accactacaaagcgatacacgatacaaaaggtcagaagatttagagactctgctggaaac 625
Query: 426 cagcaatatcacaaatcctccactggccctgggatcccaagggctttggaaatgactgga 485
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 626 cagcaatatcacaaatcctccactggccctgggatcccaggggctttggaaatgactgga 685
Query: 486 gcaaggtccttgctcgtgtttctttatgacaaaataaaggagtggcttagagtaccagat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcaaggtccttgctcgtgtttctttatgacaaaataaaggagtggcttagagtaccagat 745
Query: 546 cccttgcttagtatttgtggggccttgggctttaccccattacccaaactaaa 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cccttgcttagtatttgtggggccttgggctttaccccattacccaaactaaa 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_n21.g1 MSMg01no052_n21.g1 CHROMAT_FILE:
MSMg01no052_n21.g1 PHD_FILE: MSMg01no052_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:37 2005
(543 letters)
>mm_chr4_148837474_148838414
Length = 941
Score = 611 bits (316), Expect = e-179
Identities = 335/342 (97%), Gaps = 3/342 (0%)
Strand = Plus / Minus
Query: 203 ttgctcagcctgctctcttatagaacccaagactgccagcccagagatggtcccacccac 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ttgctcagcctgctctcttatagaacccaagactgccagcccagagatggtcccacccac 882
Query: 263 aagaggcctttcccccttgatcactaattgaaaaaatgccatacagatggatctcacgga 322
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 881 aagaggcctttcccccttgatcactagttgaaaaaatgccatacagatggatctcacgga 822
Query: 323 ggcatttcctcaagggaggctc-ttttttctgtgataactcctgcttgtgtcaagttgat 381
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggcatttcctcaagggaggctctttttttctgtgataactcctgcttgtgtcaagttgat 762
Query: 382 acacaaagtcagccagtataattcctaattaaaatagggtaatgtacatttaaaattttt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acacaaagtcagccagtataattcctaattaaaatagggtaatgtacatttaaaattttt 702
Query: 442 tgagatgggaggtctcgctatgcagacaaggcgggctagaacgcaccctgctgtacctaa 501
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 701 tgagatgggaggtctcgctatgcagacaaggcgggctagaacgtaccctgctgtacctaa 642
Query: 502 tttacctttttttttttttaatttgcgcttcatacttacctc 543
|||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 641 tttacc--tttttttttttaatttgtgtttcatacttacctc 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 941
Length adjustment: 10
Effective length of query: 533
Effective length of database: 931
Effective search space: 496223
Effective search space used: 496223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
