Query= MSMg01no052_o03.b1 MSMg01no052_o03.b1 CHROMAT_FILE:
MSMg01no052_o03.b1 PHD_FILE: MSMg01no052_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:38 2005
(673 letters)
>mm_chr4_116647201_116648274
Length = 1074
Score = 1257 bits (650), Expect = 0.0
Identities = 665/670 (99%), Gaps = 1/670 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagggctagcctcagctgcatgtcagagttcacaaggagtctaggctacatgag 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagggctagtgtcagctgcatgtcagagttcacaaggagtctaggctacatgag 263
Query: 64 accctgcctctgac-ataaaactaatcatctgatgctgaggcttttcccttagacggcta 122
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 accctgcctctgacaataaaactaatcatctgatactgaggcttttcccttagacggcta 323
Query: 123 gcagctgctccaccaggttcccatagtgcatgctcacagagaatctgcttcttattgttc 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 gcagctgctccaccaggttcccatagtgcatgttcacagagaatctgcttcttattgttc 383
Query: 183 tagttgtatatcccatcacactgaggctagaggagccctttcaagatggcttcttccact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagttgtatatcccatcacactgaggctagaggagccctttcaagatggcttcttccact 443
Query: 243 tatatcctcgaagataaaaggcacagtccctgttctaaagcacacaccaagttgaactga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatatcctcgaagataaaaggcacagtccctgttctaaagcacacaccaagttgaactga 503
Query: 303 gaaactggactgaacatggacccctttgtctgtcaaacataggactttcctgtttgaaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaactggactgaacatggacccctttgtctgtcaaacataggactttcctgtttgaaat 563
Query: 363 gttaactctaacagaatgtttctttcctgcctggtagagcatgtgcctacagcctgtgct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaactctaacagaatgtttctttcctgcctggtagagcatgtgcctacagcctgtgct 623
Query: 423 cgggttgatgcactgcgatctcatgggtatccaaaagaggctctcagactcacggtggcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgggttgatgcactgcgatctcatgggtatccaaaagaggctctcagactcacggtggcc 683
Query: 483 atcattaatactctgaggttgcagcagcagcggcagctagagatctacaaacatcagaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atcattaatactctgaggttgcagcagcagcggcagctagagatctacaaacatcagaag 743
Query: 543 aaaggtatagtgattaggaatcctctaacatcctggggtctcagggtgataaggacctgc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaggtatagtgattaggaatcctctaacatcctggggtctcagggtgataaggacctgc 803
Query: 603 aggagataaaaagatgaagaacctaattttcattcagtaccatgggcttgagaattccaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aggagataaaaagatgaagaacctaattttcattcagtaccatgggcttgagaattccaa 863
Query: 663 gtaattctac 672
||||||||||
Sbjct: 864 gtaattctac 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_o03.g1 MSMg01no052_o03.g1 CHROMAT_FILE:
MSMg01no052_o03.g1 PHD_FILE: MSMg01no052_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:38 2005
(552 letters)
>mm_chr4_116756649_116757608
Length = 960
Score = 890 bits (460), Expect = 0.0
Identities = 499/516 (96%), Gaps = 8/516 (1%)
Strand = Plus / Minus
Query: 1 ttactatccaggacttgatctatgtaactgggtcaagatcctgagtttaccaagcctact 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 603 ttactaaccaggacttgatctatgtaactgggtcaagatcctgagtttaccaggcctact 544
Query: 61 catcactatgatcaagggagaagaggtcc-aactttgtcgctgatactatgtagcatgtc 119
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct: 543 catcactatgatcaagggagaggaggtccaaactttgtcgctgatactttgtagcatgtc 484
Query: 120 attgaagcatcctgctagtttccctgctttttctgtcaaccttggccatctactgcttga 179
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgaagcatcccgctagtctccctgctttttctgtcaaccttggccatctactgcttga 424
Query: 180 gcaggcactcaaacttggctgccaggaattttgcagaaccctgggagtgctcagctgggg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 423 gcaggcactcaaacttggctgccaggaattttgcagaaccctgggagtgctcagttgggg 364
Query: 240 taagaagagtcaggggtaataatgtccctaggctg-------ggggctgtgtgcagctca 292
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 taagaagagtcaggtgtaataatgtccctaggctggggggctggggctgtgtgcagctca 304
Query: 293 atgacagagtgcacggtaggtgtgaggctcagtgctgtcaagaggggagctgaggatggc 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303 atgacagagtgcacggtaggtgtgaggctcagtgctgtcaagaggggagctgagaatggc 244
Query: 353 tatgtaagtagtgctagcaaagggaggctagttagaagtcaccttattatttgttattat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tatgtaagtagtgctagcaaagggaggctagttagaagtcaccttattatttgttattat 184
Query: 413 tttaatttaattttttttattgacagtctcactatgcttctctggctagcctgtctcctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tttaatttaattttttttattgacagtctcactatgcttctctggctagcctgtctcctg 124
Query: 473 ggattaaaggagtgagccaccatgtctggtgctccc 508
||||||||||||||||||||||||||||||||||||
Sbjct: 123 ggattaaaggagtgagccaccatgtctggtgctccc 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 960
Length adjustment: 10
Effective length of query: 542
Effective length of database: 950
Effective search space: 514900
Effective search space used: 514900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
