BAC Information

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BAC

Clone NameMSMg01-053C08
Chromosome4 (Build37)
Map Location 65,733,073 - 65,733,439
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C08.T7 (MSMg01no053_c08.b1)MSMg01-053C08.TJ (MSMg01no053_c08.g1)
ACCAG281446AG281447
length704973
length of high quality
(start - end)
366 (70 - 435)---
definitionCHROMAT_FILE: MSMg01no053_c08.b1 PHD_FILE: MSMg01no053_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:58 2005CHROMAT_FILE: MSMg01no053_c08.g1 PHD_FILE: MSMg01no053_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAGGGTTGACGATTATGGTCCAAGTTCACACATTGAATGAATAATAC
AGTATTATAACTCATATTGGATGCCAATAACTTAATTTTCTTATACTGAC
ATCTACAACCGCTCAAGGCTAATGAATTAAACCCATAAGAAACTAGAGCC
TGAGAGCCTTGAGATCTAAGACTGTGAGTATTGTTGTTTAATGGGATCTC
ATCTTAACCTTTTTTTATGTAATACACATACAAAAATTAACAATCTATGC
CACCTGTGGCTTATTCATCTTTCTCCTGTGCCCAGGTCCTGGCCCTAATT
ATTCTTTGGATAAGTATTGGTTGCACAAGTGCCTACAAAAATGTGTTCTC
CAGCGTAGTGGGCACATGAAATCCAGGTTGTCTCTATGAAAATGCGTTGC
AGACATGTCATATATACCCTGTTCTGAAGACTCATTATGAAAAATACATA
AGATACTTAGTCCCTGTTTATTTAGTTACATTTGGGCATCCATATTTCTT
CATACATTTGTTGACCTGCACCCTGACTATTAGTGTAATTCCACTTTTTT
TACTCATCTTAAATCTTATTTAACTCTACCTTATGCATACTAATTGTACT
AACGCTTGCCTTAATAAATATTCTGGACACCTTGGGTCGTCTGTTTTCCT
TTTA
AAGGTTTTGGGTTGGTCTGTNNGNATGNCTGTTTTCCAAAAAAGGGGGGN
GGNNNNTNNTNNANGGTTTCCCCACAAAAATTGTTCATCTAATTAAATAG
ATGACAGTATATTAATCTATACCTTGTATCACACTTTTACACACCCTCCC
CTTCGCCTTTTTCCGTTATTATTTGCAAGATACCCGACAAAACGTACGAA
AACATTATTAAATTATTTATATGGANTATTCATCGCTTTATTCTGGAAAT
CCTGGTCGAACGATCATCCTTTTGAATCCCAGGGTCACCAAGGCAATACA
ACACACCCCATGAATATCGAATTTCTGCGAGTAGTCGGACATACCCTCTA
TACGTAGGCGAGCTAGGTAGTCAAAAGAGAGCTGCGGAGGGGGAGGAGGG
CAGAGTGAGCGGACAGCAGAGGCCGAGCCGAGGATTAGTCAAATAGGGTA
CTCTGTTCGTGTTGTCAACCAGTCTCCGTACACACAGTTGAATGGCCACT
CTATTCGTACTAATGGTCAAACGCGATTCCCCACCCCCCACCCCTTTCTC
CAACCTTTTCGCTATTTACACCGTATCGCAGTGCGGCCGGGAGAATTATG
GCTCCGCCGCCCTATTTAGCGCCCCGGACCACTATTAGACCGATGTGTAT
GCAACAAAAACGCACGTTCAACTCTTTGAACCCCATCACGTTCATCCAAA
GTTAAGTTGCACGAAACTGAACGACGGTCACGACACCTGTTGACCGCCGG
GTGATGCGCACACTTATGCATGGTATATATAGCCGACGTGCATGTGCAAC
CACGACAACCACTGACTGTACCTCATATACACCGAGGTTTCATCCCCAGG
CATGACGAAAGGACGGGGCAGGAGAGGCCCGCAAGAGTATAACGCACGTG
AAGAAATCTGAAACCCACTTTAGCGTAATAAGGAATGACGAGATAGAACA
CCGAAATAAGATTAGCGCTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c08.b1 MSMg01no053_c08.b1 CHROMAT_FILE:
MSMg01no053_c08.b1 PHD_FILE: MSMg01no053_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:58 2005
         (366 letters)



>mm_chr4_65732873_65733639
          Length = 767

 Score =  615 bits (318), Expect = e-180
 Identities = 355/368 (96%), Gaps = 3/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtccaagttcacacattgaatgaataatac--agtattataactcatattggatgccaa 58
           |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||
Sbjct: 567 ggtccaagttcacacattgaatgaataagacatagtattataactcatattggatgccaa 508

                                                                       
Query: 59  taacttaattttcttatactgacatctacaaccgctcaaggctaatgaattaaacccata 118
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 507 taacttaattttcttatactgacatctacaacctctcaaggctcatgaattaaacccata 448

                                                                       
Query: 119 agaaactagagcctgagagccttgagatctaagactgtgagtattgttgtttaatgggat 178
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 agaaactggagcctgagagccttgagatctaggactgtgagtattgttgtttaatgggat 388

                                                                       
Query: 179 ctcatcttaacctttttttatgtaatacacatacaaaaattaacaatctatgccacctgt 238
           || |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttatcttaacc-ctttttatgtaatacacatacaaaaattaacaatctatgccacctgt 329

                                                                       
Query: 239 ggcttattcatctttctcctgtgcccaggtcctggccctaattattctttggataagtat 298
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 tgcttattcatctttctcctgtgcccaggtcctggccctaattattctttggaaaagtat 269

                                                                       
Query: 299 tggttgcacaagtgcctacaaaaatgtgttctccagcgtagtgggcacatgaaatccagg 358
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 tggttgcacaagtgcctacaaaaatgtgttctccagtgtagtgggcacatgaaatccagg 209

                   
Query: 359 ttgtctct 366
           ||||||||
Sbjct: 208 ttgtctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space:   270606
Effective search space used:   270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)