BAC Information

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BAC

Clone NameMSMg01-053G14
Chromosome4 (Build37)
Map Location 27,537,775 - 27,537,954
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G14.T7 (MSMg01no053_g14.b1)MSMg01-053G14.TJ (MSMg01no053_g14.g1)
ACCAG281635AG281636
length689698
length of high quality
(start - end)
179 (234 - 412)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no053_g14.b1 PHD_FILE: MSMg01no053_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:19 2005CHROMAT_FILE: MSMg01no053_g14.g1 PHD_FILE: MSMg01no053_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCATTCTTTCTACAAAGAATGATTGACTTGAGATATAATCTGGTTGA
TTATTATTGAAATACTCATACAGTATAAGATTTTATTCATTTTCTATTTT
CAAAAATTGAGAGTATTTTTCCTAAAACTTAGCACCATTACTGATTTATT
CAAAGTGTAGTAAGCCTTTCAATTCAGAAAAAAAGAGTAAAATTAAATTG
GTGCTAAAATTAATTTATTAAACCTTCCTTTGTTCTTTAGTTCTTTTTTA
GCAATTTATTTTCAATGCTGTGTATTATACACAGGCAATCGCCATCTCAC
TGAGCTGTATTCTCCGTTAGCCCATGCTGATGCTATTCAAAGAACATTAA
TTGGAAAAATAGCACTCTAGCATAAGCTTTTGAATATGAATTTCATCACT
TGGTAAACTACATGACGATGGAAAAATATCAACCCCTGATTATCTTTTTA
TAAAGTTTGAATTAACATATTACACCAGTGAAGTTCTTGCCAGGCACATA
TGGCGGTTTGATTAAGAATGGTCCCCGAAGCCTCAAATATCCCATTCTTA
AGCACCAAAAAGTGACACTAATTTGAAAAGATTATAAGGATTACGTAGAT
ATTGTTTTTGCACCACGACTTGCGTCACTGGCTTGCCGC
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTTTTTATATTTCTTCACTC
AGTTTAGGGATGAAAGCTAAGTCATTTTCTTCCTTTCTGGAAAAGCACTA
TTTAAATGGCATTCGTCTTTGTCATATACCCTCTAAATATCAGGGAACAT
TGGAGGCTCTTCTTTTCTATTTTTTGGTGTCCACCCTATTATCAGTTTTC
CATTGCATGTTCATTGAGATTAGCCAGCTCTTTTCTTCCTGATGCTTCCC
ACTGAGTATGAAATAATGCAAGGTAGTATGGTTGTTTGCTTGCTTGTATG
TCACTGTCAGGACAAGTTTAATGTGTCCTATGCCCTATGTTTGCACGTTT
ATAGAATTTAACGTGTTGAGAGGAGGAGAAATGTAAGCACACCTTTACCC
TCATGAAGTAGATGCACCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTTTCCCTTCTTATTCCATCTTCTTCCTCTTACCTTCTTCTA
CCACCCTCTATAATTTTTTCCACCCTTTTTTTACTATTCATATTTCTACT
CCTTCACTTTTCTTTCCTCTCTTCTTTCTCTTCCCATTTTATTATAATTA
TACTTTTATACTTCTTTACATATACATTATTACCATATTTTCCTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g14.b1 MSMg01no053_g14.b1 CHROMAT_FILE:
MSMg01no053_g14.b1 PHD_FILE: MSMg01no053_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:19 2005
         (179 letters)



>mm_chr4_27537575_27538154
          Length = 580

 Score =  302 bits (156), Expect = 1e-86
 Identities = 174/180 (96%), Gaps = 1/180 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtaaaattaaattggtgctaaaattaatttattaaaccttcctttgttctttagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtaaaattaaattggtgctaaaattaatttattaaaccttcctttgttctttagttc 260

                                                                       
Query: 61  -ttttttagcaatttattttcaatgctgtgtattatacacaggcaatcgccatctcactg 119
            |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tttttttagtaatttattttcaatgctgtggattatacacaggcaatcgccatctcactg 320

                                                                       
Query: 120 agctgtattctccgttagcccatgctgatgctattcaaagaacattaattggaaaaatag 179
           |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct: 321 agctgtattctccgttagtccattctgatgctattcaaagaacattaaatggaaaaatag 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space:    97812
Effective search space used:    97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)