BAC Information

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BAC

Clone NameMSMg01-053I12
Chromosome4 (Build37)
Map Location 27,626,968 - 27,627,316
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053I12.T7 (MSMg01no053_i12.b1)MSMg01-053I12.TJ (MSMg01no053_i12.g1)
ACCAG281721AG281722
length703702
length of high quality
(start - end)
89 (159 - 247)350 (72 - 421)
definitionCHROMAT_FILE: MSMg01no053_i12.b1 PHD_FILE: MSMg01no053_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:28 2005CHROMAT_FILE: MSMg01no053_i12.g1 PHD_FILE: MSMg01no053_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAACCGGGCCGCGGAA
NNCANNGCTTAACCCNGACGGGAAGCACANGACAACAGNAAAGAACCAAT
CNTGCCCCTCCCACCATACCCCCAACGNCANNAANAAANTNTCGGCTGGC
NCAAGCAAATTCATTGGAGGTTAAATACCTTAACATTCAGCTGGATGGTG
ATGGCTCATGCCTTTAATCCCAGAACTCAGGAGGCAAATCTAGGCATATC
TTTGAGTTTGAGGTCAGCCTGGTCTATATAGTATGTCTCAGGACAGCCAG
GGCTACAGGGAGTATTTTTGTTTTGGAAAACAAACAAAACAACACAAACA
CAAATATTTTCTCTCCCACCCCCCCATTCTTAACTGGAAAGTATTTGGCT
ATAGATGCTGAATGAAAGCCTTTTCTAAAGCTAAACTATATGCTGTCAGC
AATTGGCAATTTATCTCCACAATACAATAATAAGAAATACTGAAACTATG
TGTACTTCTGTCTGAAAGCACATAAGTCATTAACATATCATACAGAATCA
AAAATAATTGCCAGGCTATTCCTTCCAAATAAAATAATAATAATAATAAA
AATAATTCCTTCTAAAGGTTCGGAAAAACTTGTCCCGCGGGCCCCTTGGC
TCCATTTTTTTTTTTTTTTCAACCAACCGTAAGAACTTTTCTTGAATAAA
TAA
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGCAACAGAATCCTTCATGGATTCCTT
ATATAAAGACCCATGAAGTCCATCATCAATCTGCCACTCTCAGTCTATGT
CTGTTCTTAATATCTAACAAATGCATTGTTCTCTCAAATTTCAAGTAATG
CTATGTTTGTAGCAAATACTGATTAATACTTTGTTAGAAAAAGATGTTAA
AACATAGTACATTGTGGTGATGCACAATGTAACTTGGAGAGACAAATTAT
TTTCTATTCTAATATGGTAATAAAATATCTCACATATCAATTAGCATAAA
AATAAAATCAAATATTTGTAATAAGCATTTATTCTAGTAAATCCTAAAGC
AAGTGGTAACATATGGTGAATCCTCAGAAAGACTCTGTAAGGCTCTGAGC
ATTTCACATGACATCAGACCTGGGCTGCCTAGGGTGACCGAGTCATTAGT
AAGTGGAGTTCACCTTTCATTTTCTGATTTCTATTAGTTTGTACAAAGGA
TTTTACATTTTGCTTTTAAATAGGAATGCAATGTGATAAAGATTTCAATT
AAAAGGCTGCCTGTTTGGGTAAATTCATTTTTTAATAAGAACAGNAAATA
TTTTTCAGTTTATACACGCTCTTTGTGCGAAATCAGTTTCCCTGCTCTTT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_i12.g1 MSMg01no053_i12.g1 CHROMAT_FILE:
MSMg01no053_i12.g1 PHD_FILE: MSMg01no053_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:28 2005
         (350 letters)



>mm_chr4_27626768_27627517
          Length = 750

 Score =  598 bits (309), Expect = e-175
 Identities = 339/349 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcaacagaatccttcatggattccttatataaagacccatgaagtccatcatcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatgcaacagaatccttcatggattccttatataaagacccatgaagtccatcatcaatc 490

                                                                       
Query: 61  tgccactctcagtctatgtctgttcttaatatctaacaaatgcattgttctctcaaattt 120
           |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 489 tgcctctctcagtctatgtctgttcttagtatctaagaaatgcattgttctctcaaattt 430

                                                                       
Query: 121 caagtaatgctatgtttgtagcaaatactgattaatactttgttagaaaaagatgttaaa 180
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 429 caagtaaagctatgtttgtagcaaattctgattaatactttgttagaaaaagatgttaaa 370

                                                                       
Query: 181 acatagtacattgtggtgatgcacaatgtaacttggagagacaaattattttctattcta 240
           |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 369 acatagtaaattgtggtgatgcagaaagtaacttggagagacaaattattttctattcta 310

                                                                       
Query: 241 atatggtaataaaatatctcacatatcaattagcataaaaataaaatcaaatatttgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atatggtaataaaatatctcacatatcaattagcataaaaataaaatcaaatatttgtaa 250

                                                            
Query: 301 taagcatttattctagtaaatcctaaagcaagtggtaacatatggtgaa 349
           |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 249 taagcatttattctaggaaatcctaaagcaagtggtaagatatggtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)