CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CATTTACAGCACTCTTCAGCAATGTAGAAATAATATGCAAATATCATTCA
TCTGTTCTAGTCAATTAAATATCTCCTATAGTTCTGAGATATTTATCCTT
AAAATAACATAATAATACTGTATTCACATAACATACAGTACTAACAACAT
CTGTATATTTTTAATAAGCACTAAAGGATGATTTTTAAAAGATTTCCTTG
CTGTGTATTTGGTCCTAGGCATGTGCAAGGCATGCTGGGCAGAATGCGTG
CGTACGCTCACCTGTGGATGTTGCCAAGGTAGATTTGCTTCCATTTATAG
CTTTTATAAAATATGGAAGCAGTTACACTCAAATGTGGAATGAAGCAAGG
AACCACTCCAAGTCACGTCAGCTCAAGCCCCTCAGGATGCTGGGACTGAG
GCAAGGGGGCCTCACTAAGACAATGAGATTTCTCATTCTACAAGACATCT
ATTTTTAATCATATGGTTTAAATGCTATAATTTTTACCAGCATTAAAATT
CATCCTGATTGTGTTCTTTCTTGCTCAGGAATTTCATCTCTTTTTCTGTT
TTTAACTTTTTGTTTATTAATATCTTGTTAAAACTTGTTTTGTTTTATTG
CTTCCTTCCTTTTCTTTTAATCTTGNTTTAGCAAGGCGATAAAGGTAATC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACCAGTTTGAGGCTAGCCATGAGGACA
TAGTGAGTTTGGGGGCAGATTGAATTGCAGAATGGGACCCTGTCTAAGGA
AAAAAAAAAAAAGAAAAAAGAAAACAAACCAAACAACTCAATAACAGCAA
ACACCAAGGGTCTGGAAAGATGGCTCAGCACTGAAACTATCTGTGGAAGA
CAATCTTCAGAAGCTCAGAGCCGTGAGTAACTCCAGCTTCTTGGGAGTTC
TTCCTGGCCTCCGTAGACACTTGGCATGCAGATAACATACACACAGGTAA
ATCCTCACATACATAAAATAAAATGAAATGATAAAAAAAATCGAAACAAA
CAATAATAAACACATAGCAAAAACAAGTCCCTTCTCCCCCGATCCCCCAA
ATCCCAGATAGAGCAGCCTGGTCAAGTGTGTCTGACCATCTACTCTCTAC
AAGGCACTTAGGAGAAGCCTCTCTGTTTGCTGGCATTTGAAATAAGAGCT
GAATAACACGAAGGTATGAACCATGCACAGATGATGATTTTTATTTGCCA
GTATTAGAAGGAGAAGTATCTTCATCAATGTGGGCTATAAGCTATGTTGA
CAGCCCATCAGTTAACGAAATCTTTAGTTCCGAAAAAAAGGAACATGTTA

Query= MSMg01no053_k18.b1 MSMg01no053_k18.b1 CHROMAT_FILE:
MSMg01no053_k18.b1 PHD_FILE: MSMg01no053_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:39 2005
         (628 letters)



>mm_chr4_84690200_84691229
          Length = 1030

 Score = 1145 bits (592), Expect = 0.0
 Identities = 616/624 (98%), Gaps = 2/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatttacagcactcttcagcaatgtagaaataatatgcaaatatcattcatctgt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcatttacagcactcttcagcaatgtagaaataatatgcaaatatcattcatctgt 771

                                                                       
Query: 67  tctagtcaattaaatatctcctatagttctgagatatttatcctt-aaaataacataata 125
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 770 tctagtcaattaaatatctcctatagttctgagatatttatccttaaaaataacataata 711

                                                                       
Query: 126 atactgtattcacataacatacagtactaacaacatctgtatatttttaataagcactaa 185
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atactgtagtcacataacatacagtactaacaacatctgtatatttttaataagcactaa 651

                                                                       
Query: 186 aggatgatttttaaaag-atttccttgctgtgtatttggtcctaggcatgtgcaaggcat 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aggatgatttttaaaagaatttccttgctgtgtatttggtcctaggcatgtgcaaggcat 591

                                                                       
Query: 245 gctgggcagaatgcgtgcgtacgctcacctgtggatgttgccaaggtagatttgcttcca 304
           ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 590 gctgggcagaatgagtgagtacgatcacctgtggatgttgccaaggtagatttgctttca 531

                                                                       
Query: 305 tttatagcttttataaaatatggaagcagttacactcaaatgtggaatgaagcaaggaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tttatagcttttataaaatatggaagcagttacactcaaatgtggaatgaagcaaggaac 471

                                                                       
Query: 365 cactccaagtcacgtcagctcaagcccctcaggatgctgggactgaggcaagggggcctc 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 cactccaagtcatgtcagctcaagcccctcaggatgctgggactgaggcaagggggcctc 411

                                                                       
Query: 425 actaagacaatgagatttctcattctacaagacatctatttttaatcatatggtttaaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 actaagacaatgagatttctcattctacaagacatctatttttaatcatatggtttaaat 351

                                                                       
Query: 485 gctataatttttaccagcattaaaattcatcctgattgtgttctttcttgctcaggaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gctataatttttaccagcattaaaattcatcctgattgtgttctttcttgctcaggaatt 291

                                                                       
Query: 545 tcatctctttttctgtttttaactttttgtttattaatatcttgttaaaacttgttttgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcatctctttttctgtttttaactttttgtttattaatatcttgttaaaacttgttttgt 231

                                   
Query: 605 tttattgcttccttccttttcttt 628
           ||||||||||||||||||||||||
Sbjct: 230 tttattgcttccttccttttcttt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1030
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1020
Effective search space:   630360
Effective search space used:   630360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)