BAC Information

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BAC

Clone NameMSMg01-053M14
Chromosome4 (Build37)
Map Location 126,191,839 - 126,192,085
singlet/doubletsinglet
Overlap geneEif2c4
Upstream geneGrik3, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351
Downstream geneClspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053M14.T7 (MSMg01no053_m14.b1)MSMg01-053M14.TJ (MSMg01no053_m14.g1)
ACCAG281907AG281908
length715696
length of high quality
(start - end)
---246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no053_m14.b1 PHD_FILE: MSMg01no053_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:48 2005CHROMAT_FILE: MSMg01no053_m14.g1 PHD_FILE: MSMg01no053_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAACCGCGGAA
TCCTAATATTACCACACAGTACCCTTACTGAATAGGGACTAATGGACATT
GGCTCATTAAAGAAATACCTATAATGATGTGAATTATATATGTGTGGTTC
ACACTCACATACGAATTCAAACATATAAAATAATGACTGCATTACTTGAT
AGGAACAAGGAACGAGATAGATCTAGAAGACATATTTGTACATGTTAAGA
CTAATGAGCATCCGGCAAGATCTCTCAGTGGATAGAAAGGTTGGCTGCTA
GCAAACTCATATCTGATTTTTGTTCCTAGTGTCCACACCGAGAATGTAGA
GAAATGATTCCTCTACCCCCCACACGCATTCTGTTGATCAAGTGTACATA
CACTCTCATATGTACATATATATACACACATGCACATATACATGTACATT
CACGTGCATATACACTCACCTCATATATATTTTACTCCGTAATCTGCCAC
AATCAATGTCCTGTACAACAATGCTATCCATTTCCTTCTGGGTTTTTGTA
ATTCACAAGTTTTTATCCGCTTTCTGAATTCCAACTCTTTGTCTGCTCCT
TAATCATTTTTTATTACATTATTATTACACTTACCCCTATTCCCCTTTTT
ATTTAATCCCTATTCCTTATTATTTATTTACCCTCGCCTACTCAGACTTG
TTCTTTCTCTTTTGA
TACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAATAACCCAACTCATGTAAG
ATTGATATGTATTTAAACACTGTTTATTTAGGAGAGCCAAAAGCCAATCT
TTCATGTCAGACAAAAGGTTAGTGATCCCGAGGACAGGAATGCATCTGCC
ACATGCAGTAAGTGCACGGGCACTTCCATACTCACTTCTCTCAGGCACAG
AACTCGATGCACCACACGTTGTGTGATTAGAAAAGCAAGATTGAGTAAGA
AGGAAAGAACACACTGCTAGAGACAGGCACTAATAGCTGAGAGCAACATG
GAGCTATAAAGGAAGGGAGGACAACTACACAAATATTCAAAGCAGTATCT
GTCTTCCAATGAAGGCCTGTATGATGGCTAGACCCTAGTAGAGACATCCT
GTACTGAAAATTACAACAGTATACCAATTGATTACAAGTATTGTATTCCT
TTTTAAACGTCTTAATTGTGTTTGCATGTACCATGTACGTACCATATGCG
TGCATGCCTGCGCGAGCATATGGAGGCCAGGGTTCTACCATTGACTCCTC
CTCAATCATTTTGTTTTTTGGAACTAGTCTCCCCTGGCCCTAAAAAACAC
TCATCAGTGAATAAACTGGCTGAAGAAAAAGCCCAGGGTATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_m14.g1 MSMg01no053_m14.g1 CHROMAT_FILE:
MSMg01no053_m14.g1 PHD_FILE: MSMg01no053_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:48 2005
         (246 letters)



>mm_chr4_126191639_126192285
          Length = 647

 Score =  416 bits (215), Expect = e-121
 Identities = 239/247 (96%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaataacccaactcatgtaagattgatatgtatttaaacactgtttatttaggagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaataacccaactcatgtaagattgatatgtatttaaacactgtttatttaggagagc 260

                                                                       
Query: 61  caaaagccaatctttcatgtcagacaaaaggttagtgatcccgaggacaggaatgcatct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 caaaagccaatctttcatgtcagacaaaaggttagtgatcccgaggacaggaatgcattt 320

                                                                       
Query: 121 gccacatgcagtaagtgcacgggcacttccatactcact-tctctcaggcacagaactcg 179
           ||||| ||||||||||||| |||||||||||| |||||| || |||||||||||||||||
Sbjct: 321 gccacgtgcagtaagtgcatgggcacttccatgctcactctcactcaggcacagaactcg 380

                                                                       
Query: 180 atgcaccacacgttgtgtgattagaaaagcaagattgagtaagaaggaaagaacacactg 239
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atgcaccacacattgtgtgattagaaaagcaagattgagtaagagggaaagaacacactg 440

                  
Query: 240 ctagaga 246
           |||||||
Sbjct: 441 ctagaga 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)