BAC Information

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BAC

Clone NameMSMg01-054B04
Chromosome4 (Build37)
Map Location 29,459,936 - 29,460,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B04.T7 (MSMg01no054_b04.b1)MSMg01-054B04.TJ (MSMg01no054_b04.g1)
ACCAG282109AG282110
length750779
length of high quality
(start - end)
299 (99 - 397)232 (73 - 304)
definitionCHROMAT_FILE: MSMg01no054_b04.b1 PHD_FILE: MSMg01no054_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:10 2005CHROMAT_FILE: MSMg01no054_b04.g1 PHD_FILE: MSMg01no054_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACCTTACCAAAAATAAAAATTTTTTCCCCNNNCCNCCCTTCCATCACC
CGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCCACATATGGTCTCACAAGCATATGGAGGTCAGGAAGTTG
AAGGTGGTGTTTGGAAAAATGGCCTCCATAGGCTCAGAATATTCACCACA
GGGAGTGGAAGGTACTCTTTGATGGAATTAGAAAGATTAGGATATGTGAT
CATCTTGAAGGAAATGTATCAATGAGGATGAGCTTTGAGATTTCAAAAGT
TCATTTCGGTTCCAATCCTGTGGATATAGACAAGGAATTCTCCACTGCTT
CTCCAGAACTCTGTCTTGGGCTGTCATCCTTCCCACCATGATAATAATGG
ACTATAGCTTTGAAACTGTAAGCAAGCCTCCCACTAAATGTTTTCTTTTA
AAGGAGTTGCCAGTCGTATCATTTGTTTCATCCATATCATTGGAATAATG
ATTAAGAATTAGGGAAATTTTTTTTCTTATGGAAAATTTATTAATTATCC
CCTTTAAAGGTGTTCATTGGGCTGGTTTAATGTGTACGAAGGTTTATTTC
CAAGGGCCTTAAAAATCCTGGCATTTTTGAGTCCTTTGTGGCCAACTTGG
TCTTGTGGAAACCCCTGGGGTTTTTTTCCCCTTTTTTCCCAAAAAACAAA
AAATTAAACCCCAATAAAGTCTTTCCCCAAAATTTTGGCCCAGGCTACAG

AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTTTTCTTTAGGGTCTTTCCAGATT
TTCTTTAATAAATCTATATTTATTCTGTGCATTCCTTTTCCATATATCTT
TATTCTTTTGGCATGAGTCAATGAACTTGAAAATTAATGGCTTGGCAGCT
TGGTGTGACTCTCTCTATGACCACTGATCACTTAGAAACCTCTTGAAGAA
CCCATTTCAGTTTGACCTGAGCCTAGGTACTTGAGGCAGGAGTGGGTGGG
TGGGTGGGTGGGTCGCCCTTTTTTTACCCCCTCCATTGCCCCCCCCCCAC
ACATTTCATACCACCCCCCCCTTCTCTCCCTATTTACATTTACACCCCCC
TTCATCTTCTCCCCCCTATCCACCCACCATTTTTATCTCTTTTTATCCGC
ACCCTCTTTTTTTTTTTTTCTCCCCCCTTCCCCTCCTTTCTACTTCCCCA
TCTCCACTCTATTTTTCTTCACCCTTTTATTTTCTTCCCCATCTCCCCTT
CTTCATTAATATTTTTCTTTTTCTTATAACATCTTCCTCCCTATTACTCC
ATTCTATTTTCTCTTAACCTTTGATACCATTATTATCTCTTCCTCCCCAC
CCCCTTCACCCCCCCTTTCCCTTTTATATCCCACCGCCCCCACTCCCCCT
CAATCCCCACCATTTTTCACCACCCCCCCCACCCCCCCCCTCCTCTTCCC
TTCTTTATTTTCCTTTACAACCACATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b04.g1 MSMg01no054_b04.g1 CHROMAT_FILE:
MSMg01no054_b04.g1 PHD_FILE: MSMg01no054_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:11 2005
         (232 letters)



>mm_chr4_29459736_29460367
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctttttctttagggtctttccagattttctttaataaatctatatttattctgtgcat 60
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctctttttctttggggtctttccagattttctttaataaatctgtatttattctgtgcat 260

                                                                       
Query: 61  tccttttccatatatctttattcttttggcatgagtcaatgaacttgaaaattaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttttccatatatctttattcttttggcatgagtcaatgaacttgaaaattaatggct 320

                                                                       
Query: 121 tggcagcttggtgtgactctctctatgaccactgatcacttagaaacctcttgaagaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcagcttggtgtgactctctctatgaccactgatcacttagaaacctcttgaagaacc 380

                                                               
Query: 181 catttcagtttgacctgagcctaggtacttgaggcaggagtgggtgggtggg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttcagtttgacctgagcctaggtacttgaggcaggagtgggtgggtggg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)