BAC Information

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BAC

Clone NameMSMg01-054E07
Chromosome4 (Build37)
Map Location 146,902,344 - 146,902,917
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054E07.T7 (MSMg01no054_e07.b1)MSMg01-054E07.TJ (MSMg01no054_e07.g1)
ACCAG282252AG282253
length749685
length of high quality
(start - end)
304 (427 - 730)575 (57 - 631)
definitionCHROMAT_FILE: MSMg01no054_e07.b1 PHD_FILE: MSMg01no054_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005CHROMAT_FILE: MSMg01no054_e07.g1 PHD_FILE: MSMg01no054_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNNNNNNNNNNNNNCCCCCCCTCTCCCTCNNNCTCNGACTAACGA
CCGCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGNGAACCG
CGGAATTCAACCTTGACTATAAAAAGACTGACATGTTGAATTCAAATTTA
TGCTAGGCTGATTAGTCTGATCCTTAGCCTGTCATGAATTCACACAGTCA
CTAAAGCAACTTTTCTTAGTTCATCCTATGCTTGTGTATGGAGTGATTTC
ACTCTGGCAATGTATATTATTTCCACCAGCTCCATCTACAGCCTTTTTAC
ACAAAGAAATATTTACAATAATGTTTCTGAGGTAAGCTCTGGTGGCTCAG
GCCACCTTGATCCCAGTTTTTTTTTCCTGATACAATGACATTGCTTTTTC
TCATAATTAATCTTCTCACACTCTTGAGGGAAAAGGTCCTACCAAAACAA
AGTTGTTGTACTTTGGGGATTTTTCAGTTATATTGTCTTGGTATTTATCT
TTCAATTTTGTTTCCTTTATCCATCTCTGCTCTGACCTCTTAATTGTTTC
TATCCCTAATGTTTCCCAGTTATGAGAAATTTCATTCCTTTGATCAGCTA
CTTTCATACATGTGTCTGTTTAGAGCAACATCGCCTGTAGCTCAGCCTTT
CACGAAGCTCTATAATTAAGAATTGTTGTCATAGGGTTTACTGTTGCGAA
CAGACAGGTGACCAAGGCAACTCTTATAAGGACAAGACAACATTTCAAT
TGGCGGCCGCCTGTTCCAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTAGATACTCTTCATTTCACGGTGCAGATAGTTTGTGCATATT
CACATGTCATGTTTCCATTGTTCTGTTTTCCATGTAAAAAAATGTCTTCT
TATTCTTCATGTGTATCTTTTTGATTGAAGTCATTTATTCACATGATATC
ACTGCAGCCCTTCCTCTCTTCCTAGTAACCCCTCACATAAATCTCCCCTC
ACTCCGCTTCGAAGCAGAAGTATTCATCTGTCGGATGTAGAGGTAGTGCA
GTTCTTTTCCTAGTCTATAGGGATCCTGAAGATGGTGACTTTTGACTTAC
AGAAGCACTTAGCATTTATGAGTTTCCATTTATTAATTCTTGACTTTATC
ATCAGAGACACTGGTGTTCTGTTTAGGAAGTTGTTTCCTGATCTAACAAG
TTCAAAGCTACTCTCCACTTTTTGTTCCATTAGATTAAGTATGTCTGGAT
TTATATTGAGGTCTTTGCTTCACTTGGACTTGAGTATTATGCAGGGTGTT
AAATATGGATCTATATGCTTTTTTCTACCTGATGACATCCAGTTAGACCA
GCATCATTCATTAAAGATGTTCTCTCCTTTCCGTTGTATAGTTTTAGCTT
CTTTGCCAAAATTTAAATGTCCTGTAAGTGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_e07.g1 MSMg01no054_e07.g1 CHROMAT_FILE:
MSMg01no054_e07.g1 PHD_FILE: MSMg01no054_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:25 2005
         (575 letters)



>mm_chr4_146902144_146903118
          Length = 975

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%), Gaps = 1/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcatgtttcc 260

                                                                       
Query: 61  attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatctttttgatt 320

                                                                       
Query: 121 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacccctcac 380

                                                                       
Query: 181 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtagaggtag 440

                                                                       
Query: 241 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttacagaagc 500

                                                                       
Query: 301 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagcatttatgagtttccatttattaattcttgactttatcatcagagacactggtg 560

                                                                       
Query: 361 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtttaggaagttgtttcctgatctaacaagttcaaagctactctccactttttgtt 620

                                                                       
Query: 421 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccattagattaagtatgtctggatttatattgaggtctttgcttcacttggacttgagta 680

                                                                       
Query: 481 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatgcagggtgttaaatatggatctatatgcttttttctacctgatgacatccagttag 740

                                              
Query: 541 accagcatcattcattaaagatgttctctcctttc 575
           ||||||||||||||| |||||||||||||||||||
Sbjct: 741 accagcatcattcat-aaagatgttctctcctttc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)