ATGGNNNGGGGGGGGGNNGGGGGGTTCTTTNTNCCCGGGGAGTNNNNCAT
TATAATTTGGGCCGCTAAAGATCACATTCGGTATTAGAGGGNGGANNNNN
NNNTTTTCAGTATGAAAGGTGGAAAANGNAGGNGAAGGTANATAAGGGNN
GAGGNTTTGTCACTATAAGGAGAAAATGANNANTTAAATTNATTGAATGT
TNAAGGAATGTTGAAATTTTATAAAATANTGTNAATGGTATGGAGAANAA
AGGGAAGTAATAANNNTAAAGGGGGAAAANAATTTNTTTAAAATTGTTAT
AANANAGAGAGAAGTTGGTAAGAATTATAGGGAGAAAGAAAGNANAAAAT
TATAGAATTTTATATTTTAAAGAAANGAAAGGANTNAAAGAAANAAGGAA
TTTTTTTGACCCACCATGGAAGAGGGAGGGNTGAAGATGGTACTCACATA
GTCTGAGATTCAGGAAAAATAGAATTTATCTTTGAAGAAGTGAATTAATA
CCAGCAAATTCATCTCCAGAGCAATTTGTGTGGTGCTTGTCTAAGTTAAG
GTGTAAACGATATGGACTTAATAGTCCAGCTCCATGTTGCAGGTGTGGTA
CCTTCAGAAAAATGGAGGAAATAGCCGGCATTTACTCAAAGCCTTGAGAT
TCGATTAAGGAAATCTGTATGAAATAAACTTCACAATCACTTTATTTTTG
TTGTTTTTTAAGCATCACTTGGAAATTTGAAGTTGTATCAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTAACTCTATGGAGACATTTTTTAAAAACTTCTCAAAATTG
GGAATATAATGGATTCATAAGTTAATTGGTTAGTCAACTTTTTCATGTCA
GCTCTTTATAAAGGGATTAAAAATTAGAAAGAAATTCAAGATAAACAGAA
TCAATGCATTCTGAAGAAAAGACAATAAGTGTGCTTAGATATTAAATGAG
CTATTTTGTATCTTTCTTTTTTCTTCATTCTTCTTTTTCACTTCTCTGTT
GAAGAGTTATGCAGATATTTGTGTGTAGCCCAATACACCCACAGCAAGGA
GTTCCTCAGCAGAGGTTGCCTGCATGATCCTGTACAGTGTTATAAGTCGC
AGTCCTAATGTACTGCAATTAGATGGATTTGGGAGAGATCTAAAAGCTCC
TTGTGAAGGCAGGTATATCGTGATGTCCTATACATATTCTAGATAATCCT
ATGCATGTTACATATGTATCTCTCTCTCTCTCTCACACACACACACACAC
ATATATTGGTATAAGGTAGGAAGATAAGGACACAGGTAGAAGATATAGAA
GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGAGG
CATATCCCTACTTTTTATCTTTTTCCGACCTCAAAC

Query= MSMg01no054_g19.g1 MSMg01no054_g19.g1 CHROMAT_FILE:
MSMg01no054_g19.g1 PHD_FILE: MSMg01no054_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:36 2005
         (584 letters)



>mm_chr4_36511834_36512817
          Length = 984

 Score =  845 bits (437), Expect = 0.0
 Identities = 467/477 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaactctatggagacattttttaaaaacttctcaaaattgggaatataatggattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atttaactctatggagacattttttaaaaacttctcaaaattgggaatataatggattca 618

                                                                       
Query: 61  taagttaattggttagtcaactttttcatgtcagctctttataaagggattaaaaattag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 taagttaattggttagtcaactttttcatgtcagcactttataaagggattaaaaattag 558

                                                                       
Query: 121 aaagaaattcaagataaacagaatcaatgcattctgaagaaaagacaataagtgtgctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaagaaattcaagataaacagaatcaatgcattctgaagaaaagacaataagtgtgctta 498

                                                                       
Query: 181 gatattaaatgagctattttgtatctttcttttttcttcattcttctttttcacttctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 gatattaaatgagctattttgtatctttcttttttcttcattcttcttttacacttctct 438

                                                                       
Query: 241 gttgaagagttatgcagatatttgtgtgtagcccaatacacccacagcaaggagttcctc 300
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 gctgaagagttatgcagatatttgtgtgtagtccaatacacccacagcaaggagttcctc 378

                                                                       
Query: 301 agcagaggttgcctgcatgatcctgtacagtgttataagtcgcagtcctaatgtactgca 360
           |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 377 agcagaggttgcctgcgtgatcctgtacagtgctataagtcgcactcctaatgtactgca 318

                                                                       
Query: 361 attagatggatttgggagagatctaaaagctccttgtgaaggcaggtatatcgtgatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attagatggatttgggagagatctaaaagctccttgtgaaggcaggtatatcgtgatgtc 258

                                                                    
Query: 421 ctatacatattctagataatcctatgcatgttacatatgtatctctctctctctctc 477
           |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 ctacgcatattctagataatcttatgcatgttacatatgtatctctctctctctctc 201



 Score =  176 bits (91), Expect = 4e-48
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                       
Query: 494 atatattggtataaggtaggaagataaggacacaggtagaagatatagaagggagagaga 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atatattggtataaggtaggaagataaggacacaggtagaagatatagaagggagagaga 176

                                          
Query: 554 gagagagagagagagagagagagagagagag 584
           |||||||||||||||||||||||||||||||
Sbjct: 177 gagagagagagagagagagagagagagagag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)