BAC Information

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BAC

Clone NameMSMg01-054H05
Chromosome4 (Build37)
Map Location 36,118,312 - 36,118,715
singlet/doubletsinglet
Overlap genenone
Upstream gene3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054H05.T7 (MSMg01no054_h05.b1)MSMg01-054H05.TJ (MSMg01no054_h05.g1)
ACCAG282383AG282384
length890708
length of high quality
(start - end)
109 (127 - 235)404 (76 - 479)
definitionCHROMAT_FILE: MSMg01no054_h05.b1 PHD_FILE: MSMg01no054_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:38 2005CHROMAT_FILE: MSMg01no054_h05.g1 PHD_FILE: MSMg01no054_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTNTNTTCTTTCTCTCCTTCCCCCCACTGGCCGC
GCCTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGGAGACC
GCGGAATTCTTTTTTTCCCATAAAATTTTACTTTATTAGATATTTTCTTT
ATTTATATTTCTTTTTTATTTTTATTTTTTAATTGGGTATTTATTTCATT
TACATTTCCAATGCTATCCCAAAAGTCCCCCGCACCCTCCCTTATATAGA
CCCTCATCCTCAAACTCCCATTTCTTGCCCCTGGTATTCCCTTGAATCGG
GTAATTTTTTGTTTGCACGTTCTCTGCGTCCGCTTTTATCCATGCTGTGC
GATTAGAGCCTTTTCTGATTTTTTTTTTTTTATGAGAGACGAGCTTCTGT
CGTAGTATTGCCTTATTTATTGTTGTTCCGCCCTCTATATTACCGTCATA
TCCCATACAGTTCCTTTTTTTTCTCCTCCCCCAGATTCATTTTTAGTTTA
CCATTTGTTTGTTTTACCCAATTAGATAACTCGTATATATTGGTTTTCCC
TTGTGTTCTGCTCCTATTTCCCTTTTTTTTTTTCTTTTATTTCCATTATT
CTTCCCATCTTTGCGTATTGGATTAGCGCTCTCCCTCTTGTCTTTCTTTT
AGTACTTTCCTTATTGTGTATGTTCCGCCACCCTTTCCCCACCGAAAACA
AATAAGTAACCATTTACCAACCTCTCCAAGCGCCACGGCCCACCATCTCG
CCGTTTATATCTCCTTGTCCATCTCTTCTCTCTTCTGTTTTCCCGCCTCC
GCTGTTCCTCTCTTCTCTTGGGCTCCAGTATATCAAAGCATATCACGTAT
CACTCCTCACGTCACTATTGATGATCTTGCTCTGTCCGAG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATTCCTCTTAATTCAATTTCTTA
TGAAGCAAAATTTACAGAGATTCTAAATTCATTAAATTCTTTCATTGTTC
AGCATTAAAGAAAAAGACAAAGAAAAATTAATAAGCTACTTATCTTCTTG
ATGGTAAATAAGATTAAAATATTCAAATATCCCAGCAATGGAGATTCTCT
ACCATTAGAAAGTTCCCAATACTACGTACCAAACTATGTAAACATGTATT
GTGCTCTAAACCAAAGTAGCCTAGAGAACACAGAACTATGAGTTACCTTA
TCTGCTGAGATATTCATATCTGTGTGGCTTGTACCTAAAGTGAAGTTCTA
GAAACTTATTCTAGAACCAGATTATCAATATGAATAGATTCTTGTCGCAT
TATATTATCAGCCATAAGCATGAGGAACACACACACACACACTCTCACAC
ACTACCAGTAATGGACTGGATAAGTAAAATATGGTTGTACTAAAGTATAG
ACATATTTCAAAATACCCAATAATATAATATTAAGTACAACCTAGGGAAA
CATAAAGAAGGCATGATTGTATGACTAGAGAAGAAATAAAAAACAGTTAA
TATCCAATATAATATTCAGAGTATTGAAAGTAATATTAATTTAAAGCAAT
GAAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_h05.g1 MSMg01no054_h05.g1 CHROMAT_FILE:
MSMg01no054_h05.g1 PHD_FILE: MSMg01no054_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:38 2005
         (404 letters)



>mm_chr4_36118112_36118915
          Length = 804

 Score =  750 bits (388), Expect = 0.0
 Identities = 400/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcctcttaattcaatttcttatgaagcaaaatttacagagattctaaattcattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattcctcttaattcaatttcttatgaagcaaaatttacagagattctaaattcattaa 260

                                                                       
Query: 61  attctttcattgttcagcattaaagaaaaagacaaagaaaaattaataagctacttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctttcattgttcagcattaaagaaaaagacaaagaaaaattaataagctacttatct 320

                                                                       
Query: 121 tcttgatggtaaataagattaaaatattcaaatatcccagcaatggagattctctaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgatggtaaataagattaaaatattcaaatatcccagcaatggagattctctaccat 380

                                                                       
Query: 181 tagaaagttcccaatactacgtaccaaactatgtaaacatgtattgtgctctaaaccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaagttcccaatactacgtaccaaactatgtaaacatgtattgtgctctaaaccaaa 440

                                                                       
Query: 241 gtagcctagagaacacagaactatgagttaccttatctgctgagatattcatatctgtgt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gtagcctagagaacacagaactatgagttaccttatctgttgagatattcatatctgtgt 500

                                                                       
Query: 301 ggcttgtacctaaagtgaagttctagaaacttattctagaaccagattatcaatatgaat 360
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 501 ggcttgtacctaaagtgaagttctagaaacttattctagaagtagattatcaatatgaat 560

                                                       
Query: 361 agattcttgtcgcattatattatcagccataagcatgaggaaca 404
           |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 agattcttgtcgcattatattatcagtcataagcatgaggaaca 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)