BAC Information

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BAC

Clone NameMSMg01-054L01
Chromosome4 (Build37)
Map Location 9,545,536 - 9,546,090
singlet/doubletsinglet
Overlap geneAsph
Upstream geneEG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
Downstream geneGdf6, 4930448K20Rik, LOC666840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054L01.T7 (MSMg01no054_l01.b1)MSMg01-054L01.TJ (MSMg01no054_l01.g1)
ACCAG282556AG282557
length646705
length of high quality
(start - end)
501 (14 - 514)556 (77 - 632)
definitionCHROMAT_FILE: MSMg01no054_l01.b1 PHD_FILE: MSMg01no054_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:56 2005CHROMAT_FILE: MSMg01no054_l01.g1 PHD_FILE: MSMg01no054_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATGATCAAGTTGCTGGTTTATCAAACAATGAAGGATTAATTTCCTC
ATTCAAAGATAAAAAGGTAGAATGTCAAGATGACTCTGAGGGTGGAGTAG
CTACATCTTTAGATGAAAAAACTCCATTAGAGTCTGAGGGTTCAAAGTTC
TCAGCTTCAATAGGGTTTTTCTACAAATCTCCATCCTAAATTACAAGATC
CCATTACTCTTAAAAAATTAACTTATTTCCTTTACATCCTGATGGCAGCT
TCCCCTGCCTCCTCTCTTCCCAGTCCCCCCATGTCCTCTCCCCTCTCTCC
ACCTCCCTTTCTCTTCAGAAAAGGAGAGGCCTCCCATGAATATCCACCCA
CCTTGGCATACCAAGTTGCAGTAGGATTAGGCTCATCTTCTCGTATTGAG
TCCAGAAAAGGCAGCCAAGGTAGGGATAAAGAGTCCAAAGGCAGGTAATG
TAGTCAGAGATAGCCCTGCTCCAGTTGTTAGGGCTCCTACATGAAGACTA
AGCTGCACATCTCGTACTTGTGTTTTGAGGGCCTAGGTCCATCTCATGTA
TGCTGTTTGGTTGCTGGTTCTGTCTCTGTGGGCTCCTATGGACACAGGTC
AGTTGATTTTATAGGTTTTCTTATGGTGTCCTTTACCTTAATCGGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGCTCTGCAGAGTGGTACAA
GCAGCTACGCCTACTAATGTGTGTCTCATGAGACCACGTATATCAAGTAC
GAAGTCAGACTCCAGACACTGACCATACATGAGGTGACATTAAACATACT
GAAATTCACAAGGAACACGATCAGGCAGGGAAATGACAACGGGAGAGAGC
AGATGCTGATAATACAGTGCTTTGAGGCAGTGTCATCTGAAGGTCAGACG
ATGAGAAAAGAGAGATTCTTAGAAACGCTGACAGGCTAGAAAACATTTTG
AGAAAGCAATCTTTAAGGATATCTGCTCCTTAAATGTAATGGATCTCCAA
GGTCTAAATAAATTTAATGCAATGTCATTATTTACAAATTTTACAGCATT
ACCTCAGAAAATATAAATGTTACAGATGTGACAAAAACTTGCAAATTTAC
TGTTCCTTTTCAAATGTATCCTGGAAGTCTTGTTTGCTAGCTACAAAGAA
TCACAGATTGTGTTTAGCTGACAATTATCCTCAGCTAGCAGTTTACAATG
AATTAGAACTACCACATGAATGATCCTGAGTATGTCTGGGAATGGCACAG
CATGGGCAACCTCAGTCACCACGCAGGTTTATCTCGCTCTTTCGGCTCAC
CTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_l01.g1 MSMg01no054_l01.g1 CHROMAT_FILE:
MSMg01no054_l01.g1 PHD_FILE: MSMg01no054_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:56 2005
         (556 letters)



>mm_chr4_9545336_9546290
          Length = 955

 Score =  998 bits (516), Expect = 0.0
 Identities = 546/556 (98%), Gaps = 1/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagctctgcagagtggtacaagcagctacgcctactaatgtgtgtctcatgagacca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 actcagctctgcagagtggtacaagcagctacacctactaatgtgtgtctcatgagacca 260

                                                                       
Query: 61  cgtatatcaagtacgaagtcagactccagacactgaccatacatgaggtgacattaaaca 120
            ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtataccaagcatgaagtcagactccagacactgaccatacatgaggtgacattaaaca 320

                                                                       
Query: 121 tactgaaattcacaaggaacacgatcaggcagggaaatgacaacgggagagagcagatgc 180
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tactgaaattcacaaggaacatgatcaggcagggaaatgccaacgggagagagcagatgc 380

                                                                       
Query: 181 tgataatacagtgctttgaggcagtgtcatctgaaggtcagacgatgagaaaagagagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgataatacagtgctttgaggcagtgtcatctgaaggtcagacgatgagaaaagagagat 440

                                                                       
Query: 241 tcttagaaacgctgacaggctagaaaacattttgagaaagcaatctttaaggatatctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttagaaacgctgacaggctagaaaacattttgagaaagcaatctttaaggatatctgc 500

                                                                       
Query: 301 tccttaaatgtaatggatctccaaggtctaaataaatttaatgcaatgtcattatttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttaaatgtaatggatctccaaggtctaaataaatttaatgcaatgtcattatttaca 560

                                                                       
Query: 361 aattttacagcattacctcagaaaatataaatgttacagatgtgacaaaaacttgcaaat 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 aattttacagcattacctcagaaaataaaaatgttacagatgtgacaaaaacttgcaaat 620

                                                                       
Query: 421 ttactgttccttttcaaatgtatcctggaagtcttgtttgctagctacaaagaatcacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactgttccttttcaaatgtatcctggaagtcttgtttgctagctacaaagaatcacag 680

                                                                       
Query: 481 attgtgtttagctgacaattatcctcagctagcagtttacaatgaattagaactaccaca 540
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 attgtgtttagctgagaattatcctcagctagcagtt-acaatgaattagaactaccaca 739

                           
Query: 541 tgaatgatcctgagta 556
           ||||||||||||||||
Sbjct: 740 tgaatgatcctgagta 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)