BAC Information

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BAC

Clone NameMSMg01-054L02
Chromosome4 (Build37)
Map Location 10,162,613 - 10,163,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054L02.T7 (MSMg01no054_l02.b1)MSMg01-054L02.TJ (MSMg01no054_l02.g1)
ACCAG282558AG282559
length641699
length of high quality
(start - end)
493 (10 - 502)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no054_l02.b1 PHD_FILE: MSMg01no054_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:56 2005CHROMAT_FILE: MSMg01no054_l02.g1 PHD_FILE: MSMg01no054_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTTACCTTTCCTATAGAATTTTCATGCCTTGTCTTTTCTTCTTGTGTC
TGTGTAGTCCTCAAATAACTTCATCTGTTCCACTCATGACCAACTCTTGA
AAACAAGGGACAGGTACTCTAATAAGTAAGTCATTTATCCATTATCTTTT
GTACTTCAGAAACTGTTTTCCTACATCTGTGTTCTTCATGGAAGCCATAT
TCTTTCGTAGAGCAATTCTCATTTGATAAGAAGTAAATAATAAACAAAAC
TCCACTGGGAGAGGCCCTTTCAAAACCTCATGTCATAGTTGGTAGACCAC
CGTGTTTGGTGAAAATATTAAACACCTCAGATTATTTCCCTGTAGAATGT
AGAGTAGACAGTTTCCGAATGCTCAGAAGACTGGCTCCAGGCCTCTGTGA
CTGACATGTGCAATAGCTGGCCGTTCCCTGGCCCCAGATGCCTGCTCCTG
TGCATGTGCACAACTTTAAACTGAGTCATAGGAGTCAAGAATGAATGTGG
GTGTCATAGTCAGTAATCCGTTGTCTGTTACTTCATAAATAGCTTGTTCC
CAAAGTACTCTAGGCACAGCTGAACCCAGATGATCCCTTGAGCGGCTTAC
GTCCGAGTCCATTTTTAATATCCTTTTCTTTATTATTCACN
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXATTCCGACTAGGAGGTGAAC
TATAGAAGTATCAAAAAAATCCTGATCGTTCTAAAACTTTTATCATGAAT
AGGTGTTGGATCTTGTCCCTGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
TATGGATGATTTCTTTAATGTGTTCTTGGATTCAGTTAGCAAGAATTTTA
TTGAGGATTTTTTCATTGANTTTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGCATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAAAAGT
TTGTGCAGAATGGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAA
CTGCTTCTATTTCTTTAGGGGATATTGGGACTGTTTATAAGTTCCACTTG
ATCCTGATTCATCTTTGCTACCTGGTATCTGTCCAGAAATTTGTCCATTT
TTGTTCTGGTTTTCCAGGTTTTGCTGAGCATAGCCTTTTTTTACAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_l02.b1 MSMg01no054_l02.b1 CHROMAT_FILE:
MSMg01no054_l02.b1 PHD_FILE: MSMg01no054_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:56 2005
         (493 letters)



>mm_chr4_10162283_10163175
          Length = 893

 Score =  911 bits (471), Expect = 0.0
 Identities = 490/501 (97%), Gaps = 8/501 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctatagaattttcatgccttgtcttttcttcttgtgtctgtgtagtcctcaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ttcctatagaattttcatgccttgtcttttcttcttgtgtctgtgtagtcctcaaataac 772

                                                                       
Query: 61  ttcatctgttccactcatgaccaactcttgaaaacaagggacaggtactctaataagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttcatctgttccactcatgaccaactcttgaaaacaagggacaggtactctaataagtaa 712

                                                                       
Query: 121 gtcatttatc--------cattatcttttgtacttcagaaactgttttcctacatctgtg 172
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gtcatttatccatgaagacattatcttttgtacttcagaaactgttttcctacatctgtg 652

                                                                       
Query: 173 ttcttcatggaagccatattctttcgtagagcaattctcatttgataagaagtaaataat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttcttcatggaagccatattctttcgtagagcaattctcatttgataagaagtaaataat 592

                                                                       
Query: 233 aaacaaaactccactgggagaggccctttcaaaacctcatgtcatagttggtagaccacc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaacaaaactccactgggagaggccctttcaaaacctcatgtcatagttggtagaccacc 532

                                                                       
Query: 293 gtgtttggtgaaaatattaaacacctcagattatttccctgtagaatgtagagtagacag 352
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 531 atgtttggtgaaaatattaaacacctcagattatttccctgtagaatgtaaagtagacag 472

                                                                       
Query: 353 tttccgaatgctcagaagactggctccaggcctctgtgactgacatgtgcaatagctggc 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttccgaatgctcagaagactggctccaggcctctgtgactgacatgtgcaatagctggc 412

                                                                       
Query: 413 cgttccctggccccagatgcctgctcctgtgcatgtgcacaactttaaactgagtcatag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgttccctggccccagatgcctgctcctgtgcatgtgcacaactttaaactgagtcatag 352

                                
Query: 473 gagtcaagaatgaatgtgggt 493
            ||||||||||||||||||||
Sbjct: 351 cagtcaagaatgaatgtgggt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)