NNNNNNNNTTTTTTTTTTNTNTTCTCCCCTTTCTTTNNCCCCCCCTTTTT
TNNNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTAATAACGCTACCTATTCAGTAAGATACCGAATTA
CCTCAAGTATTGAAAGGAAGGCAGTGAAAGAAATCAAGCATTGCAATTTA
CTTGAATAGAGCTAGTAATCTCAGGGCTAGTGTACATAGTAAATACTTAG
AACAATAGCTGAGTCACTCCCATACACAGGAATTTACAATGGCCTAGGAA
GAAGGTGGGTTGTGGTTTTAGGAGGAACTGAAGTATTATGAAAGGGTTAG
TAGAAAGAGAATTTTCCTGGTGCATGTTTTCACTAGGCCCAGAAGAATAG
CATAATCAGGTATTTACTAAAGCACCCCTGGTGGTGGGTTTAACAATAGA
CTAGCATTGCATCAGAGCATTCACCTGGCTCCTGTGTTTAGCTGACATTA
GGTGGGGCTGCTTTTGATCCCAATTATTTACATTGATTTTTATCCCAATT
GGTTTCTGTTAGCATTTTTCTATGTATTCTTCTGTTTTGAGTAAAAGCCA
CGTATAAGTCTGATGCTCACTTTGAGATGAAAGAGCCACAAAGTGAGGAC
TCCCCCCCGTTCTGACTCATGAGAGGCGACACCCCAAAATCACCCACAAG
AAACAGTCTTGCTGCAAACTGCAAGACGAATTTTATTCTAGACCACTCTA
CGGCCCAAGGTCC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAGGGATAGTGATCAACTTTA
AGATTAGAACAGCAAAATATTGCTATGTCTTCTCATGAGGAAGAGATGAG
TGGTTCTTGCAAATTGATGAGAGTTAGTATATTGATAGATAGGGTCAGCT
GATCTGTCTCATGTCTTTTGTGCTAAGTAGAAAGCTGTGAGATTCAATGA
CCTTAAAAGACAGGGACACTGTTAGAACACAAGCTACTCTAACCTCATTC
TTCTTGTATTTTAACATCATTCTTGCGAATATCAGAAGGTTATACAACTA
AGTAGTTAAGGGGCATGGAAACATATTAGTAATATGTACATTTTCCCTTA
ATTTCAGAACCTAGGCGTTTTAGTTATTGTTTTATTGCTGTGAAAAGACA
GCATTCCCAAGGCAAAATTCACAAAAGAAAGCATTTAATTGGAGTTGAGT
TACAACTTAAAAGTTTCAGTGAAATACCATTGTGGCTGTAAGCATGGCAG
CACACAGGCAGACATTGTGATTGAAGAGCTGAGACTGTCTTCTGCAGGCA
GCCAAGAGAAGACTTTATTCTACACTGGGCAGAGCTTGAGTACAAGGAGA
CCTCAAAACCACCTACCCGGTGCCATACTTGCCAAGACAAGTTCACATCT
ATTTCAAAA

Query= MSMg01no054_n05.g1 MSMg01no054_n05.g1 CHROMAT_FILE:
MSMg01no054_n05.g1 PHD_FILE: MSMg01no054_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:06 2005
         (579 letters)



>mm_chr4_16955313_16956291
          Length = 979

 Score = 1085 bits (561), Expect = 0.0
 Identities = 573/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   taagggatagtgatcaactttaagattagaacagcaaaatattgctatgtcttctcatga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taagggatagtgatcaactttaagattagaacagcaaaatattgctatgtcttctcatga 262

                                                                       
Query: 63  ggaagagatgagtggttcttgcaaattgatgagagttagtatattgatagatagggtcag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaagagatgagtggttcttgcaaattgatgagagttagtatattgatagatagggtcag 322

                                                                       
Query: 123 ctgatctgtctcatgtcttttgtgctaagtagaaagctgtgagattcaatgaccttaaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgatctgtctcatgtcttttgtgctaagtagaaagctgtgagattcaatgaccttaaaa 382

                                                                       
Query: 183 gacagggacactgttagaacacaagctactctaacctcattcttcttgtattttaacatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacagggacactgttagaacacaagctactctaacctcattcttcttgtattttaacatc 442

                                                                       
Query: 243 attcttgcgaatatcagaaggttatacaactaagtagttaaggggcatggaaacatatta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attcttgcgaatatcagaaggttatacaactaagtagttaaggggcatggaaacatatta 502

                                                                       
Query: 303 gtaatatgtacattttcccttaatttcagaacctaggcgttttagttattgttttattgc 362
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtaatatgtacattttcccttaagttcagaacctaggcgttttagttattgttttattgc 562

                                                                       
Query: 363 tgtgaaaagacagcattcccaaggcaaaattcacaaaagaaagcatttaattggagttga 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 tgtgaaaagacagcattcccaaggcaaaattcacaaaagaaagcatttaattggagctga 622

                                                                       
Query: 423 gttacaacttaaaagtttcagtgaaataccattgtggctgtaagcatggcagcacacagg 482
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gttacaacttaaaaggttcagtgaaataccattgtggctgtaagcatggcagcacacagg 682

                                                                       
Query: 483 cagacattgtgattgaagagctgagactgtcttctgcaggcagccaagagaagactttat 542
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 683 cagacattgtgattgaagagctgagactgtcttctgcagacagccaagagaagactttat 742

                                                
Query: 543 tctacactgggcagagcttgagtacaaggagacctca 579
           |||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctacactgggcagagcttgagtacaaggagacctca 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)