BAC Information

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BAC

Clone NameMSMg01-054N10
Chromosome4 (Build37)
Map Location 14,139,443 - 14,139,674
singlet/doubletsinglet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054N10.T7 (MSMg01no054_n10.b1)MSMg01-054N10.TJ (MSMg01no054_n10.g1)
ACCAG282666AG282667
length690705
length of high quality
(start - end)
638 (36 - 673)233 (126 - 358)
definitionCHROMAT_FILE: MSMg01no054_n10.b1 PHD_FILE: MSMg01no054_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:07 2005CHROMAT_FILE: MSMg01no054_n10.g1 PHD_FILE: MSMg01no054_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCC
CACCTGGTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTTATGTA
AGAATCCAGCCACCTCTTTGTACCTTGCTGGTGTGTCACCCAACTTCCTT
ATTGTCTTCAGCATAAAATGTCTGATGCTCGATTTGACATTACATTCAGA
TTCCATACGACCTCTCCTGTGTGCGTCTGTCTGTCAATTCATCCTACGCT
TTGTCTACCCGAGACTAGAGACCCGTTCCACGCAGACAAAGGGGCCCAGA
GGGTCTGCGGCAGAACATCTTGGTTTCTCTATTTATGGTAATTGAGAGTT
TTGCTGGGTATAGTAGCCTAGGCTAGCATTTGTGTTCTCTTAAGGTCTGC
ATAACATCTGTCTAAGATCTTCTGGGTTTTAGAGTCTATGCTGAAAAATC
TGGTATAATTCTGATAGGTCTGTCTTTATATGTTACTTCAACCTTTTCCC
TTACCCCTTTTTAGTATTCTTTCTATTTTCTGTATATTTAGTGTTTTGAT
TATTATGTGATGAGAGGAATATCTTTTCTGGTACAATCTATTTGGTGTTC
TGTAGGCTTCTTGTACATTTATGGCCATCTCTTTCTTTAGATTTGGAAAG
TTTTCTTCTATGATATGATTTTGCTGAAGATGTTTTCTGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCCCGAGAAATTCCAGACCTAAATTCATGTGCTTAAA
ACAGCTGCTTGGCCTTTTACTCTCACTGTGCTCTGGGTCCCTCTTACTGT
GTCTTTGCTCTGGGACCCTCTTGCTGTGCCCCTCTGTGCTGGGCTGTGTT
TCTAGAAGTGCCAGCATCTAGATAATCACAGGTCAGCCTGTGCAATGTGA
CCTGTGCCAGACAGCAATGAATTCGTGAGAAGTAATAGGTAATTTGACCT
AATTTGGCTTGAGCCTCTCTTGGGCTGAGATGAGATTACCGACTGAATAC
AATTATATATGATCTTTTGGCGCTTTTGACCTACAGGCAGCTAGGGACTC
AAGTTGGATCATCTCACCTATGAAATTTCCCCAAGGGTTTCTAGATAATG
ACTTTAAATGCTAATTACAACATGTAGTCAATGCTCTGATAAAATTGAGA
GCATTTTGATTTATGATGGATATTAAGTAAGAGCAGGAATAAAACCCAGT
GTATTTAAAGGGTTTAAATGCACTCTGAAGGTTTGAACATGAAAAGAAAA
CTGCAGAGCACTTTTTTTTTCTTTAGTAATTATGTTGTTTTAGCTAGAAA
ATATGTTCCCCTTATTACTGCCAATGTTGCTACTGTAGGAATTGACCTAG
TTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_n10.g1 MSMg01no054_n10.g1 CHROMAT_FILE:
MSMg01no054_n10.g1 PHD_FILE: MSMg01no054_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:07 2005
         (233 letters)



>mm_chr4_14139243_14139875
          Length = 633

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgctctgggtccctcttactgtgtctttgctctgggaccctcttgctgtgcccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgctctgggtccctcttactgtgtctttgctctgggaccctcttgctgtgcccctct 260

                                                                       
Query: 61  gtgctgggctgtgtttctagaagtgccagcatctagataatcacaggtcagcctgtgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgggctgtgtttctagaagtgccagcatctagataatcacaggtcagcctgtgcaa 320

                                                                       
Query: 121 tgtgacctgtgccagacagcaatgaattcgtgagaagtaataggtaatttgacctaattt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgtgacctgtgccagacagcaatgaattcctgagaagtaataggtaatttgacctaattt 380

                                                               
Query: 181 ggcttgagcctctcttgggctgagatgagattaccgactgaatacaattata 232
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ggcttgagcctctcctgggctgagatgagattaccaactgaatacaattata 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)